Factsheet for TraesCS1B01G329500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G317100.1	Wheat	mitochondrion	95.64	94.67
TraesCS1A01G317100.1	Wheat	mitochondrion	92.82	91.18
HORVU1Hr1G066760.1	Barley	plastid	89.49	79.68
TraesCS2B01G204100.1	Wheat	cytosol	77.18	43.43
Os07t0602200-01	Rice	cytosol, nucleus, plastid	77.18	43.31
EER97493	Sorghum	plastid	77.69	43.1
Zm00001d006780_P011	Maize	cytosol	77.18	42.76
Bra029339.1-P	Field mustard	cytosol	47.18	38.25
GSMUA_Achr4P03250_001	Banana	cytosol	60.77	35.69
VIT_17s0000g07280.t01	Wine grape	cytosol	58.46	35.29
Solyc03g115150.2.1	Tomato	cytosol	58.21	35.09
KRH56821	Soybean	nucleus	58.21	34.6
TraesCS3B01G318000.1	Wheat	cytoskeleton, cytosol, nucleus	33.33	34.21
CDY42846	Canola	nucleus	44.87	33.85
Bra012984.1-P	Field mustard	nucleus	55.64	33.54
KRH03123	Soybean	cytosol	56.41	33.54
CDY02173	Canola	nucleus	55.13	33.03
CDY23088	Canola	nucleus	54.62	32.92
AT5G61060.2	Thale cress	cytosol	55.38	32.53
Bra035942.1-P	Field mustard	peroxisome	54.1	32.46
CDY16823	Canola	peroxisome	53.85	32.31
CDX87200	Canola	peroxisome	54.1	32.21
AT5G61070.1	Thale cress	cytosol	53.33	30.5
CDY47012	Canola	cytosol	31.79	28.97
TraesCS5B01G121300.1	Wheat	vacuole	28.46	24.5
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	24.36	24.17
TraesCS5B01G072100.1	Wheat	nucleus	36.41	23.13
TraesCS6B01G210200.1	Wheat	cytosol	23.08	19.65
TraesCS2B01G309700.1	Wheat	cytosol	20.51	18.6
TraesCS7B01G266000.1	Wheat	plastid	15.64	17.28
TraesCS7B01G261800.1	Wheat	nucleus	22.82	17.15
TraesCS4B01G102600.1	Wheat	cytosol, mitochondrion, nucleus	20.26	16.77
TraesCS6B01G212600.3	Wheat	nucleus	22.31	16.73

Protein Annotations

EnsemblPlants:TraesCS1B01G329500.1	EnsemblPlantsGene:TraesCS1B01G329500	Gene3D:3.40.800.20	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	PFAM:PF00850	PRINTS:PR01270
SEG:seg	SUPFAM:SSF52768	MapMan:12.3.2.1.2	:	:	:

Description

No Description!

Coordinates

chr1B:+:555624328..555635184

Molecular Weight (calculated)

42829.1 Da

IEP (calculated)

6.986

GRAVY (calculated)

-0.155

Length

390 amino acids

Sequence
(BLAST)

001: MAAAAGTARQ EGAAPRVGLL YDQRMLAHAP ALNTEKETPE RLRAIWRKLA AEGVTSRCVG MRAKEAKEKY IASVHARKHV DLIRKISSKD SSDLKKTAKK
101: FDSVYFSKGS SESAFLAAGS VIEVAEKVAA GELSSAIALV RPPGHHAEHS HPMGYCLFNN VAIAANYLLN ERPDLGINKI LIVDWDVHHG NGTQNMFYND
201: PRVLFFSVHR YGYGSFYPYE ADASHVFIGD ETGRGYNINV PWEHAKCGDA DYVAAWDHVL LPVAEAFDPD IILLSAGFDA ALGDDMGDCC ITPNGYALLL
301: TKLLGFAKGR IVMALEGGYN PESIANSVCA CAKVLLGDKF TLNSPEMQPF ESTWRVIQMV RDELKTYWPV LSSKLPENVS LRSTPSYIQK

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.