CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012984.1-P	Field mustard	nucleus	97.22	97.22
CDY02173	Canola	nucleus	96.45	95.85
AT5G61060.2	Thale cress	cytosol	85.63	83.43
CDY16823	Canola	peroxisome	81.14	80.77
CDX87200	Canola	peroxisome	81.14	80.15
VIT_17s0000g07280.t01	Wine grape	cytosol	65.53	65.63
KRH56821	Soybean	nucleus	64.14	63.26
KRH03123	Soybean	cytosol	62.44	61.59
Solyc03g115150.2.1	Tomato	cytosol	58.89	58.89
CDY42846	Canola	nucleus	46.68	58.41
GSMUA_Achr4P03250_001	Banana	cytosol	59.66	58.13
TraesCS1A01G317100.1	Wheat	mitochondrion	33.85	55.16
TraesCS1B01G329500.1	Wheat	cytosol	32.92	54.62
TraesCS1D01G317100.1	Wheat	mitochondrion	33.23	54.57
Os07t0602200-01	Rice	cytosol, nucleus, plastid	56.88	52.95
EER97493	Sorghum	plastid	56.72	52.2
Zm00001d006780_P011	Maize	cytosol	56.41	51.85
TraesCS2A01G177100.1	Wheat	cytosol	55.49	51.8
TraesCS2D01G185200.1	Wheat	cytosol, golgi	55.33	51.66
TraesCS2B01G204100.1	Wheat	cytosol	55.33	51.66
HORVU2Hr1G032540.2	Barley	plastid	57.03	50.34
HORVU1Hr1G066760.1	Barley	plastid	34.0	50.23
CDY47012	Canola	cytosol	32.92	49.77
CDX82341	Canola	nucleus	24.42	35.59
CDY24487	Canola	cytosol, nucleus, peroxisome	25.97	30.88
CDX92243	Canola	nucleus	25.81	29.3
CDY22682	Canola	cytosol	16.38	27.46
CDY06315	Canola	cytosol	16.38	27.46
CDX68980	Canola	mitochondrion, plastid	17.0	25.88
CDX75356	Canola	plastid	16.85	25.65
CDY30008	Canola	nucleus	17.16	22.11
CDY21119	Canola	nucleus	17.0	21.91
CDX99186	Canola	cytosol	14.37	21.83
CDY52901	Canola	nucleus	15.46	21.46
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	13.14	21.2
CDY48160	Canola	cytosol	12.83	20.29
CDY48157	Canola	cytosol	12.36	20.05
CDY21800	Canola	cytosol	12.36	19.95
CDY39570	Canola	cytosol	12.52	19.8
CDY16736	Canola	nucleus	14.37	19.79
CDY48127	Canola	nucleus	14.37	19.79
CDY39567	Canola	cytosol	12.36	19.7
CDX84385	Canola	cytosol	14.22	18.22
CDX88212	Canola	cytosol, golgi, nucleus, plastid	10.05	16.37
CDY41500	Canola	cytosol	14.37	16.32
CDX80555	Canola	cytosol, golgi, nucleus, plastid	8.66	14.97
CDY53952	Canola	plastid	4.17	11.11

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.10.490.10	Gene3D:3.40.800.20	GO:A0A078GEQ3	UniProt:A0A078GEQ3	EnsemblPlants:CDY23088
ProteinID:CDY23088	ProteinID:CDY23088.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0070932	EnsemblPlantsGene:GSBRNA2T00021565001	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	SUPFAM:SSF52768	UniParc:UPI0004EEB3F0
InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:	:

Description

BnaC07g30990DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078GEQ3]

Coordinates

chrLK032139:+:543803..547187

Molecular Weight (calculated)

71554.0 Da

IEP (calculated)

5.152

GRAVY (calculated)

-0.243

Length

647 amino acids

Sequence
(BLAST)

001: MAMAGESSNN NYGDCDGKSH RKVGLVYDET MCKHDTPNGE DHPECPDRIG VIWEKLQLAG VSQRCVVFGG SKAEDKHLQL VHTKDHVSVV KSLSTKKKDY
101: RRNRIASQWN SIYLNGSSSE AAFLAAGSVV ELAEKVAEGE LDCGYAIVRP PGHHAEPDEA MGFCLFNNVA VAASYLLDER PELGVKKILI VDWDVHHGNG
201: TQKMFWKDPR VLFFSVHRHE HGCFYPAGDD GDYNMVGEGP GEGFNINVPW EQGRCGDADY LAAWDHILIP VAKEFNPDII LLSAGFDAAI GDPLGGCRVT
301: PYGYSVMLKK LMEFAQGKIV LALEGGYNLD SIAKSSLACV QVLLEDKPIQ GSSEAYPFES TWRVIQAVRK KLSAYWPSLA DVLSSNLIDQ KTSTPIIVFS
401: SSDSETEDYA DDILDQMSRL NIENHHVDTV STSWRRDLSK VDVWYASFGS NMWKPRFLCY ILGGQVEGMK KVCVGSMDKT PPKQIMWESF PHRLFFGRES
501: SVTWGVGGVA FINPLTNLND QTHMCLYRIT LEQFNDVLFQ ENGLKVDSDS PLFGLDTLQL VEKKGSIPLA SGGWYGNIVC LGKECDIPIL TMTCTLSAVE
601: KFKSGEIPLR PPSEAYANTM IRGLVEGGRL SEEEAKAYID NAASKPL

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.