CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035942.1-P	Field mustard	peroxisome	96.18	96.92
CDY16823	Canola	peroxisome	96.18	96.92
CDY23088	Canola	nucleus	80.15	81.14
CDY02173	Canola	nucleus	80.61	81.11
VIT_17s0000g07280.t01	Wine grape	cytosol	61.68	62.54
KRH56821	Soybean	nucleus	61.37	61.28
KRH03123	Soybean	cytosol	59.39	59.3
GSMUA_Achr4P03250_001	Banana	cytosol	58.47	57.68
Solyc03g115150.2.1	Tomato	cytosol	56.34	57.03
CDY42846	Canola	nucleus	44.89	56.87
TraesCS1A01G317100.1	Wheat	mitochondrion	33.13	54.66
TraesCS1B01G329500.1	Wheat	cytosol	32.21	54.1
TraesCS1D01G317100.1	Wheat	mitochondrion	32.37	53.81
Zm00001d006780_P011	Maize	cytosol	56.03	52.13
Os07t0602200-01	Rice	cytosol, nucleus, plastid	55.27	52.09
EER97493	Sorghum	plastid	55.11	51.35
TraesCS2A01G177100.1	Wheat	cytosol	53.44	50.51
TraesCS2D01G185200.1	Wheat	cytosol, golgi	53.28	50.36
TraesCS2B01G204100.1	Wheat	cytosol	53.28	50.36
HORVU1Hr1G066760.1	Barley	plastid	33.13	49.54
HORVU2Hr1G032540.2	Barley	plastid	54.81	48.98
AT5G61070.1	Thale cress	cytosol	50.69	48.68
CDY47012	Canola	cytosol	31.14	47.66
CDX82341	Canola	nucleus	23.51	34.68
CDY24487	Canola	cytosol, nucleus, peroxisome	24.58	29.6
CDX92243	Canola	nucleus	24.43	28.07
CDY06315	Canola	cytosol	16.18	27.46
CDY22682	Canola	cytosol	16.18	27.46
CDX68980	Canola	mitochondrion, plastid	16.95	26.12
CDX75356	Canola	plastid	16.79	25.88
CDY30008	Canola	nucleus	17.25	22.51
CDY21119	Canola	nucleus	17.1	22.31
CDX99186	Canola	cytosol	13.74	21.13
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	12.67	20.7
CDY48127	Canola	nucleus	14.5	20.21
CDY16736	Canola	nucleus	14.5	20.21
CDY52901	Canola	nucleus	14.05	19.74
CDY39567	Canola	cytosol	11.91	19.21
CDY48160	Canola	cytosol	11.91	19.07
CDY39570	Canola	cytosol	11.91	19.07
CDY48157	Canola	cytosol	11.6	19.05
CDY21800	Canola	cytosol	11.6	18.95
CDX84385	Canola	cytosol	14.5	18.81
CDY41500	Canola	cytosol	14.5	16.67
CDX88212	Canola	cytosol, golgi, nucleus, plastid	9.77	16.12
CDX80555	Canola	cytosol, golgi, nucleus, plastid	8.4	14.71
CDY53952	Canola	plastid	4.73	12.76

Protein Annotations

EnsemblPlants:CDX87200	EnsemblPlantsGene:GSBRNA2T00146126001	Gene3D:3.40.800.20	GO:A0A078DDA5	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	ncoils:Coil	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177
PFAM:PF00850	PRINTS:PR01270	ProteinID:CDX87200	ProteinID:CDX87200.1	SEG:seg	SUPFAM:SSF52768
UniParc:UPI0004EEEEB9	MapMan:12.3.2.1.2	:	:	:	:

Description

BnaC09g05150D

Coordinates

chrLK031849:-:1131286..1135227

Molecular Weight (calculated)

71755.1 Da

IEP (calculated)

5.141

GRAVY (calculated)

-0.221

Length

655 amino acids

Sequence
(BLAST)

001: MNMAGKTSVN GESNGKVHRK VGLVYDETMC KHDTPHGEAH PERPDRIRVI WENLQLAGVT QRCVVLGGTK AEDAHLQLVH TKDHVNLVKS STNKKDYQSD
101: RVASLVNSIY LNGSTSEAAY LAAGSVVEVA ERVAKGELDS GFAIVRPPGH HAEADEAMGF CFFNNVAVAA SYLLDERPDL GVKKILVVDW DVHHGNGTQK
201: MFWEDPRVLV FSVHRREDGG FYPGGEDGSY NMVGEGPGEG FNINVPWEQG RCGDADYLAA WDHILIPVAK EFNPDIILLS AGFDAAIGDP LGGCRVTPYG
301: YSVMLKKLME FAQGKIVMAL EGGYNLDSIA KSSLACVQVL LEDNPIQGSS EEIPFMSTWR VIQAVRKRLC AYWPSLADEL SSKLINQKTP TPIVLTSNSN
401: SEAKDNAHEL LDQLSKLNIE THKVDTKVST SWRSDLSKVD VWYASFGSNM WKPRFLCYIQ GGQVEGMTKP CVGSLDKSPP KGITWGTYPN RLFFGRESTN
501: VWGKGGVAFT NPLTSPNDQT HMCLYRITLE QFNDVLFQEN GLNVDFASPI FGLTALQLVE KNGSTPLEAD LAPWYGNVVC LGREGDVPIL TMTCTLSVIE
601: KFASGEVPLS PPAKAYANTL IRGLVEGGIF SEEEAEAYID DAASKPLYIN GASRF

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.