Factsheet for TraesCS1A01G317100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G329500.1	Wheat	cytosol	91.18	92.82
TraesCS1D01G317100.1	Wheat	mitochondrion	90.68	91.37
HORVU1Hr1G066760.1	Barley	plastid	88.16	79.91
TraesCS2A01G177100.1	Wheat	cytosol	77.58	44.44
Os07t0602200-01	Rice	cytosol, nucleus, plastid	77.33	44.17
EER97493	Sorghum	plastid	77.08	43.53
Zm00001d006780_P011	Maize	cytosol	76.57	43.18
Bra029339.1-P	Field mustard	cytosol	47.61	39.29
GSMUA_Achr4P03250_001	Banana	cytosol	61.96	37.05
VIT_17s0000g07280.t01	Wine grape	cytosol	58.69	36.07
KRH56821	Soybean	nucleus	58.69	35.52
Solyc03g115150.2.1	Tomato	cytosol	57.68	35.39
CDY42846	Canola	nucleus	45.59	35.01
Bra012984.1-P	Field mustard	nucleus	56.17	34.47
KRH03123	Soybean	cytosol	56.93	34.45
CDY02173	Canola	nucleus	55.67	33.95
CDY23088	Canola	nucleus	55.16	33.85
AT5G61060.2	Thale cress	cytosol	55.92	33.43
Bra035942.1-P	Field mustard	peroxisome	54.66	33.38
CDY16823	Canola	peroxisome	54.41	33.23
CDX87200	Canola	peroxisome	54.66	33.13
AT5G61070.1	Thale cress	cytosol	54.16	31.52
CDY47012	Canola	cytosol	31.74	29.44
TraesCS5A01G119300.2	Wheat	mitochondrion	27.71	24.77
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	23.93	24.3
TraesCS5A01G065300.1	Wheat	nucleus	36.27	23.45
TraesCS2A01G293200.1	Wheat	cytosol	20.91	19.3
TraesCS6A01G181100.1	Wheat	cytosol	21.91	19.0
TraesCS7A01G362600.1	Wheat	plastid	16.62	18.59
TraesCS5A01G295000.1	Wheat	cytosol	21.91	17.98
TraesCS4A01G213200.1	Wheat	cytosol, mitochondrion, nucleus	20.65	17.41
TraesCS6A01G184100.2	Wheat	nucleus	22.17	16.96
TraesCS7A01G365600.3	Wheat	nucleus	22.17	16.83

Protein Annotations

EnsemblPlants:TraesCS1A01G317100.1	EnsemblPlantsGene:TraesCS1A01G317100	Gene3D:3.40.800.20	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	PFAM:PF00850	PRINTS:PR01270
SEG:seg	SUPFAM:SSF52768	MapMan:12.3.2.1.2	:	:	:

Description

No Description!

Coordinates

chr1A:+:508627529..508638584

Molecular Weight (calculated)

43386.5 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.194

Length

397 amino acids

Sequence
(BLAST)

001: MAAAAGTSRQ AGAAPRVGLL YDQRMLKHAP AGKKERETPE RLRAIWRKLA AEGVTSRCVG MRAKEAKEKY IASVHGPNHI DLIRNISSKD SSERKNTAEK
101: LDSIYFNKGS SESAFLAAGS VIEVAEKVAA GELSSAIALV RPPGHHAEHS KPMGFCLFNN VAIAANYLLN ERPDLGISKI LIVDWDVHHG NGTQNMFYND
201: PRVLFFSVHR YDDGSFYPYE ADASHVFIGD ETGRGYNINV PWEHAECGDA DYVAAWDHVL LPVAEAFDPD IILLSAGFDA ALGDDMGNCC ITPNGYALLL
301: TKLLGFAKGR IVMALEGGYN PESIANSVCA CAKVLLGDKF TLTSPEMQPF ESTWRVIQMV RDELKTYWPV LSSKLPENVS LRSTPSYIQP CTSSGSE

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.