Factsheet for TraesCS1D01G317100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G329500.1	Wheat	cytosol	94.67	95.64
TraesCS1A01G317100.1	Wheat	mitochondrion	91.37	90.68
HORVU1Hr1G066760.1	Barley	plastid	88.83	79.91
TraesCS2D01G185200.1	Wheat	cytosol, golgi	76.4	43.43
Os07t0602200-01	Rice	cytosol, nucleus, plastid	76.14	43.17
EER97493	Sorghum	plastid	76.14	42.67
Zm00001d006780_P011	Maize	cytosol	75.63	42.33
Bra029339.1-P	Field mustard	cytosol	47.21	38.67
GSMUA_Achr4P03250_001	Banana	cytosol	60.66	35.99
TraesCS3D01G422300.1	Wheat	cytosol	29.7	35.78
VIT_17s0000g07280.t01	Wine grape	cytosol	57.87	35.29
Solyc03g115150.2.1	Tomato	cytosol	57.87	35.24
KRH56821	Soybean	nucleus	57.11	34.3
CDY42846	Canola	nucleus	44.92	34.24
Bra012984.1-P	Field mustard	nucleus	55.33	33.69
KRH03123	Soybean	cytosol	55.33	33.23
CDY23088	Canola	nucleus	54.57	33.23
CDY02173	Canola	nucleus	54.82	33.18
Bra035942.1-P	Field mustard	peroxisome	53.81	32.62
CDY16823	Canola	peroxisome	53.55	32.46
AT5G61060.2	Thale cress	cytosol	54.57	32.38
CDX87200	Canola	peroxisome	53.81	32.37
AT5G61070.1	Thale cress	cytosol	53.3	30.79
CDY47012	Canola	cytosol	31.73	29.21
TraesCS5D01G126600.1	Wheat	mitochondrion, plastid, vacuole	28.43	25.23
TraesCS5D01G076100.1	Wheat	nucleus	36.29	23.37
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	20.05	21.58
TraesCS6D01G168400.1	Wheat	cytosol	23.1	19.87
TraesCS2D01G291000.1	Wheat	cytosol	21.07	19.3
TraesCS7D01G360500.1	Wheat	plastid	16.24	18.13
TraesCS5D01G302400.1	Wheat	cytosol	22.59	17.98
TraesCS7D01G356800.1	Wheat	nucleus	23.1	17.53
TraesCS4D01G100000.1	Wheat	cytosol	20.81	17.41
TraesCS6D01G171000.1	Wheat	golgi	22.59	15.51

Protein Annotations

EnsemblPlants:TraesCS1D01G317100.1	EnsemblPlantsGene:TraesCS1D01G317100	Gene3D:3.40.800.20	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	PFAM:PF00850	PRINTS:PR01270
SEG:seg	SUPFAM:SSF52768	MapMan:12.3.2.1.2	:	:	:

Description

No Description!

Coordinates

chr1D:+:412073883..412078533

Molecular Weight (calculated)

43206.8 Da

IEP (calculated)

8.448

GRAVY (calculated)

-0.132

Length

394 amino acids

Sequence
(BLAST)

001: MAAAAGTARQ AGAAPRVGLL YDLRMLAHAP AGKKEKETPE RLRAIWRKLA AEGVTSRCVG MRAKVAKEKY IASVHARKHV DLIRKISSKD SSDLKKTAKK
101: FDSVYFSKGS SESAFLAAGS VIEVAEKVAA GELSSAIALV RPPGHHAEHS KPMGFCLFNN VAIAANYLLN ERPDLGINKI LIVDWDVHHG NGTQNMFYSD
201: PRVLFFSVHR YDYGRFYPYE ADASHVFIGD ETGRGYNINV PWEHAKCGDA DYVAAWDHVL LPVAEAFDPD IILLSAGFDA ARGDHMGDCC ITPNGYALLL
301: TKLLGFAKGR IVMALEGGYN PESIANSVCA CAKVLLGDKF TLNSPEMQPF ESTWRVIQMV RDELKAYWPV LSSKLPENVS LRSTPLSLRS TPSY

Best Arabidopsis Sequence Match ( AT3G18520.2 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKSEKS DEKEGCSGSD MVEMGTKEAF VQLSLGSYDF KIKVILESIL PNPS

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.