Factsheet for TraesCS2D01G185200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G204100.1	Wheat	cytosol	98.85	98.85
TraesCS2A01G177100.1	Wheat	cytosol	97.84	97.84
HORVU2Hr1G032540.2	Barley	plastid	91.92	86.9
Os07t0602200-01	Rice	cytosol, nucleus, plastid	77.49	77.27
TraesCS1D01G317100.1	Wheat	mitochondrion	43.43	76.4
EER97493	Sorghum	plastid	74.75	73.68
Zm00001d006780_P011	Maize	cytosol	73.59	72.44
GSMUA_Achr4P03250_001	Banana	cytosol	57.72	60.24
VIT_17s0000g07280.t01	Wine grape	cytosol	54.55	58.51
Bra012984.1-P	Field mustard	nucleus	51.8	55.49
CDY23088	Canola	nucleus	51.66	55.33
KRH56821	Soybean	nucleus	51.95	54.88
CDY02173	Canola	nucleus	51.08	54.38
Solyc03g115150.2.1	Tomato	cytosol	50.51	54.1
Bra035942.1-P	Field mustard	peroxisome	50.36	53.69
CDY16823	Canola	peroxisome	50.22	53.54
KRH03123	Soybean	cytosol	50.65	53.51
AT5G61060.2	Thale cress	cytosol	51.23	53.46
CDX87200	Canola	peroxisome	50.36	53.28
Bra029339.1-P	Field mustard	cytosol	33.62	48.44
CDY42846	Canola	nucleus	32.61	43.71
CDY47012	Canola	cytosol	24.96	40.42
AT5G61070.1	Thale cress	cytosol	35.79	36.36
TraesCS3D01G422300.1	Wheat	cytosol	16.59	35.17
TraesCS5D01G126600.1	Wheat	mitochondrion, plastid, vacuole	17.32	27.03
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	13.13	24.86
TraesCS5D01G076100.1	Wheat	nucleus	21.64	24.51
TraesCS6D01G168400.1	Wheat	cytosol	14.72	22.27
TraesCS7D01G360500.1	Wheat	plastid	10.97	21.53
TraesCS2D01G291000.1	Wheat	cytosol	13.28	21.4
TraesCS7D01G356800.1	Wheat	nucleus	16.02	21.39
TraesCS5D01G302400.1	Wheat	cytosol	14.29	20.0
TraesCS4D01G100000.1	Wheat	cytosol	13.28	19.53
TraesCS6D01G171000.1	Wheat	golgi	15.58	18.82

Protein Annotations

EnsemblPlants:TraesCS2D01G185200.1	EnsemblPlantsGene:TraesCS2D01G185200	Gene3D:3.40.800.20	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	PFAM:PF00850	PRINTS:PR01270
SEG:seg	SUPFAM:SSF52768	MapMan:12.3.2.1.2	:	:	:

Description

No Description!

Coordinates

chr2D:-:130425457..130434385

Molecular Weight (calculated)

73869.2 Da

IEP (calculated)

5.081

GRAVY (calculated)

-0.210

Length

693 amino acids

Sequence
(BLAST)

001: MAAAGAATPV GAAPRVGLLY DDRMCAHATP DGEKHPENPE RLRAIRRKLD AEGVASRCVD MKAKEAKEKY IASVHTPNHI KLIRDISSKE YDYRRNKTAR
101: KFNSIYFNEG SSESAFLAAG SVIEVAEKVA AGELSSAIAL VRPPGHHAEH NEPMGFCLFN NVAIAANYLL NERPDLGINK ILIVDWDVHH GNGTQKMFYS
201: DPRVLFFSVH RFDYGSFYPC EGDASHCFIG EGAGEGYNIN VPWEHGKCSD ADYVAAWDHV LLPIAEAFDP DIILLSAGFD AAMGDPLGGC CITPDGYALL
301: LTKLLGFAKG RIVMALEGGY NLKSIANSLC ACTKVLLGDN FTYNSPRMQP FESTWRVIQM XXXXXXXXXX XXXXXXXXNV PLRSAPSYIE PYASSGSESD
401: VEDVSELPDA ISSVNVTQVV DDVLSKHITM LKLDEDNLAT KNTSSDSVQA QDDGPVVAST RIYDLPFTWR SALSKVYVWY ASFGSNMWKP RFLCYIEGGK
501: VDGMSISCFG SHDTSPPRGT MWKTVPHRLF FGRSSTPCWG TGGVAFLNPE INYNDESYVC MYKITLEQFN DVLFQENRLV KDNSEDGKLE SPSSPLIGLS
601: EIESVSSNKA LHLEPIKDSW YSNVLHLGEE DGLPILTMTC PSTAVAQHKS GELPLAPPSE TYSATLIKGL VEGKQLDANE AANYISSAAA RSL

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.