Factsheet for TraesCS6D01G168400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G091300.1
TraesCS1A01G279100.1
TraesCS1B01G119100.1
TraesCS1B01G288100.1
TraesCS1D01G099900.1
TraesCS1D01G278400.1
TraesCS3A01G367500.1
TraesCS3B01G399200.1
TraesCS3D01G360400.2
TraesCS4A01G091200.1
TraesCS4B01G213500.1
TraesCS4D01G214200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	TraesCS1A01G279100.1	AT2G39940.1	12445118
AT5G63110.1	TraesCS1B01G288100.1	AT2G39940.1	12445118
AT5G63110.1	TraesCS1D01G278400.1	AT2G39940.1	12445118
AT5G63110.1	TraesCS3A01G367500.1	AT2G39940.1	12445118
AT5G63110.1	TraesCS3B01G399200.1	AT2G39940.1	12445118
AT5G63110.1	TraesCS3D01G360400.2	AT2G39940.1	12445118
AT5G63110.1	TraesCS4A01G091200.1	AT2G39940.1	12445118
AT5G63110.1	TraesCS4B01G213500.1	AT2G39940.1	12445118
AT5G63110.1	TraesCS4D01G214200.1	AT2G39940.1	12445118
AT5G63110.1	TraesCS1A01G091300.1	AT3G62980.1	12445118
AT5G63110.1	TraesCS1B01G119100.1	AT3G62980.1	12445118
AT5G63110.1	TraesCS1D01G099900.1	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G181100.1	Wheat	cytosol	100.0	100.0
TraesCS6B01G210200.1	Wheat	cytosol	99.56	99.56
HORVU6Hr1G038010.6	Barley	cytosol	97.16	96.95
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	92.36	92.36
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	91.05	91.05
Zm00001d050139_P001	Maize	nucleus	89.74	83.71
GSMUA_Achr2P06520_001	Banana	cytosol	61.57	77.47
GSMUA_AchrUn_...	Banana	mitochondrion	59.39	75.14
KRH54336	Soybean	cytosol, nucleus, plastid	25.11	71.88
VIT_17s0000g09070.t01	Wine grape	cytosol	70.96	70.04
KRH63609	Soybean	cytosol	70.31	69.25
Solyc06g071680.2.1	Tomato	cytosol	71.18	69.21
PGSC0003DMT400069419	Potato	nucleus	71.18	69.21
KRH03236	Soybean	nucleus	71.18	69.07
AT5G63110.1	Thale cress	nucleus	70.52	68.58
KRH57122	Soybean	nucleus	71.18	68.49
Bra035858.1-P	Field mustard	nucleus	68.78	67.02
CDY16736	Canola	nucleus	68.78	67.02
CDY48127	Canola	nucleus	68.56	66.81
Solyc03g112410.1.1	Tomato	cytosol	61.79	63.03
CDX84385	Canola	cytosol	69.21	62.77
PGSC0003DMT400046818	Potato	cytosol	62.01	62.28
KRH54335	Soybean	cytosol, nucleus, plastid	30.57	59.83
CDY41500	Canola	cytosol	69.21	55.61
Bra038607.1-P	Field mustard	cytosol	68.56	55.09
TraesCS7D01G356800.1	Wheat	nucleus	60.7	53.56
TraesCS2D01G291000.1	Wheat	cytosol	50.0	53.26
TraesCS6D01G171000.1	Wheat	golgi	60.26	48.08
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	20.31	47.45
TraesCS4D01G100000.1	Wheat	cytosol	44.76	43.52
TraesCS5D01G302400.1	Wheat	cytosol	46.29	42.83
TraesCS7D01G360500.1	Wheat	plastid	20.09	26.06
TraesCS1D01G317100.1	Wheat	mitochondrion	19.87	23.1
TraesCS3D01G422300.1	Wheat	cytosol	14.85	20.8
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	16.38	20.49
TraesCS5D01G126600.1	Wheat	mitochondrion, plastid, vacuole	17.47	18.02
TraesCS2D01G185200.1	Wheat	cytosol, golgi	22.27	14.72
TraesCS5D01G076100.1	Wheat	nucleus	19.21	14.38

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144
SUPFAM:SSF52768	EnsemblPlantsGene:TraesCS6D01G168400	EnsemblPlants:TraesCS6D01G168400.1	InterPro:Ureohydrolase_dom_sf	TIGR:cd09991	:

Description

No Description!

Coordinates

chr6D:+:153807426..153810924

Molecular Weight (calculated)

50969.9 Da

IEP (calculated)

5.203

GRAVY (calculated)

-0.399

Length

458 amino acids

Sequence
(BLAST)

001: MAASGEGASL PSPAGGEDSR RRRVSYFYEP TIGDYYYGQG HPMKPHRIRM AHSLVIHYGL HRLLELSRPF PASEADISRF HSDEYVSFLA SATGNPTILD
101: PRAVKRFNVG EDCPVFDGLF PFCQASAGGS IGAAVKLNRG DADITVNWAG GLHHAKKGEA SGFCYVNDIV LAILELLKFH RRVLYVDIDV HHGDGVEEAF
201: FTTNRVMTVS FHKYGDFFPG TGHITDVGAG EGKHYAVNVP LSDGIDDDTF RDLFQCIIKR VMEVYQPEVV VLQCGADSLA GDRLGCFNLS VKGHADCLRF
301: LRSFNIPMMV LGGGGYTIRN VARCWCYETA VAVGVEPDNK LPYNDYYEYF GPDYNLHIQP RIVENLNTTK DLENIKNMIL DHLSKLEHVP NAQFHERPSD
401: PEGPEEKEED MDKRPAQRSR LWSGGAYDSD TEDPDNMKTE ANDLSANSIM KDASNDDL

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.