Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G184100.2 | Wheat | nucleus | 89.72 | 99.23 |
| TraesCS6B01G212600.3 | Wheat | nucleus | 89.02 | 98.27 |
| HORVU6Hr1G038710.1 | Barley | cytosol | 87.11 | 96.53 |
| EES04741 | Sorghum | nucleus | 79.97 | 88.78 |
| Zm00001d016381_P001 | Maize | nucleus | 63.07 | 88.73 |
| Zm00001d053595_P004 | Maize | nucleus | 78.57 | 87.23 |
| TraesCS7D01G356800.1 | Wheat | nucleus | 73.69 | 81.5 |
| VIT_03s0038g04240.t01 | Wine grape | nucleus | 69.34 | 79.28 |
| VIT_14s0006g01820.t01 | Wine grape | nucleus | 68.82 | 78.69 |
| GSMUA_Achr2P19590_001 | Banana | nucleus | 61.85 | 78.02 |
| Os02t0215200-02 | Rice | cytoskeleton, cytosol, nucleus | 68.82 | 77.6 |
| KRH60609 | Soybean | nucleus | 66.9 | 77.26 |
| Os02t0214900-01 | Rice | cytoskeleton, cytosol, nucleus | 68.64 | 77.25 |
| Bra040131.1-P | Field mustard | nucleus | 67.42 | 77.09 |
| CDY30008 | Canola | nucleus | 67.42 | 77.09 |
| KRH77972 | Soybean | nucleus | 66.72 | 77.06 |
| KRH27562 | Soybean | nucleus | 66.72 | 77.06 |
| AT4G38130.1 | Thale cress | nucleus | 67.25 | 77.05 |
| GSMUA_Achr5P06320_001 | Banana | nucleus | 62.2 | 76.94 |
| CDY21119 | Canola | nucleus | 67.25 | 76.89 |
| KRH51318 | Soybean | nucleus | 66.38 | 76.66 |
| GSMUA_AchrUn_... | Banana | cytosol | 51.22 | 74.62 |
| GSMUA_Achr8P04190_001 | Banana | cytosol, nucleus, plasma membrane | 49.3 | 65.66 |
| GSMUA_Achr1P14440_001 | Banana | cytosol | 46.52 | 64.18 |
| TraesCS6D01G168400.1 | Wheat | cytosol | 48.08 | 60.26 |
| TraesCS2D01G291000.1 | Wheat | cytosol | 44.6 | 59.53 |
| TraesCS4D01G100000.1 | Wheat | cytosol | 38.5 | 46.92 |
| TraesCS5D01G302400.1 | Wheat | cytosol | 39.37 | 45.66 |
| TraesCS7D01G360500.1 | Wheat | plastid | 16.03 | 26.06 |
| TraesCS1D01G317100.1 | Wheat | mitochondrion | 15.51 | 22.59 |
| TraesCS1D01G274900.1 | Wheat | cytosol, nucleus, plastid | 13.94 | 21.86 |
| TraesCS3D01G422300.1 | Wheat | cytosol | 12.37 | 21.71 |
| TraesCS5D01G126600.1 | Wheat | mitochondrion, plastid, vacuole | 14.81 | 19.14 |
| TraesCS2D01G185200.1 | Wheat | cytosol, golgi | 18.82 | 15.58 |
| TraesCS5D01G076100.1 | Wheat | nucleus | 16.38 | 15.36 |
Protein Annotations
| MapMan:12.3.2.1.1 | MapMan:12.3.2.4.1 | Gene3D:3.40.800.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf |
| InterPro:IPR037138 | PFAM:PF00850 | PIRSF:PIRSF037913 | PRINTS:PR01270 | PRINTS:PR01271 | PANTHER:PTHR10625 |
| PANTHER:PTHR10625:SF127 | SUPFAM:SSF52768 | SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS6D01G171000 | EnsemblPlants:TraesCS6D01G171000.1 | InterPro:Ureohydrolase_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:157583544..157588892
Molecular Weight (calculated)
64251.2 Da
IEP (calculated)
5.754
GRAVY (calculated)
-0.604
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLPRFTSLS RSSLFFSPLF LFFLRVTYPF GSHTQTRKNN PSPKTPPPRG GGVAMDPSSA GAGGNSLPSV GPDGQKRRVC YFYDSEVGNY YYGQGHPMKP
101: HRIRMTHSLL AQYGLLDQMQ VLRPNPARDR DLCRFHADDY ISFLRSVTPE TQQDQIRALK RFNVGEDCPV FDGLYSFCQT YAGASVGGAV KLNHGLDIAI
201: NWSGGLHHAK KCEASGFCYV NDIVLAILEL LKHHQRVLYV DIDIHHGDGV EEAFYTTDRV MTVSFHKFGD YFPGTGDVRD IGHSKGKYYS LNVPLDDGID
301: DESYQSLFKP IMAKVMEVFQ PGAVVLQCGA DSLSGDRLGC FNLSIRGHAE CVKYMRSFNV PLLLLGGGGY TIRNVARCWC YETGVALGQE LEDKMPVNEY
401: YEYFGPDYTL HVAPSNMENK NTRYELDNIR TKLLDNLSKL RHAPSVQFQE RPPDTEFPEP DEDEEDQDER HDDHDSDMEL DYHTPLEDSA RRSTIQGTRV
501: KRESAGAETK DQQDGSRVTG EHRGSEPMAE DISPSKQAHQ VDANAMAVDE PGNVKTESGS STKLPDPPAI YQKP
101: HRIRMTHSLL AQYGLLDQMQ VLRPNPARDR DLCRFHADDY ISFLRSVTPE TQQDQIRALK RFNVGEDCPV FDGLYSFCQT YAGASVGGAV KLNHGLDIAI
201: NWSGGLHHAK KCEASGFCYV NDIVLAILEL LKHHQRVLYV DIDIHHGDGV EEAFYTTDRV MTVSFHKFGD YFPGTGDVRD IGHSKGKYYS LNVPLDDGID
301: DESYQSLFKP IMAKVMEVFQ PGAVVLQCGA DSLSGDRLGC FNLSIRGHAE CVKYMRSFNV PLLLLGGGGY TIRNVARCWC YETGVALGQE LEDKMPVNEY
401: YEYFGPDYTL HVAPSNMENK NTRYELDNIR TKLLDNLSKL RHAPSVQFQE RPPDTEFPEP DEDEEDQDER HDDHDSDMEL DYHTPLEDSA RRSTIQGTRV
501: KRESAGAETK DQQDGSRVTG EHRGSEPMAE DISPSKQAHQ VDANAMAVDE PGNVKTESGS STKLPDPPAI YQKP
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
Arabidopsis Description
HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.