Factsheet for GSMUA_Achr5P06320_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P12560_001
GSMUA_Achr5P27930_001	nucleus
GSMUA_Achr8P01750_001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	GSMUA_Achr3P12560_001	AT2G45640.1	16429262
AT4G38130.1	GSMUA_Achr5P27930_001	AT4G32010.1	23362207
AT4G38130.1	GSMUA_Achr8P01750_001	AT4G32010.1	23362207
AT4G38130.1	GSMUA_Achr5P27930_001	AT4G32010.1	23362207
AT4G38130.1	GSMUA_Achr8P01750_001	AT4G32010.1	23362207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P19590_001	Banana	nucleus	86.64	88.35
Zm00001d016381_P001	Maize	nucleus	64.22	73.04
VIT_03s0038g04240.t01	Wine grape	nucleus	77.37	71.51
KRH60609	Soybean	nucleus	75.86	70.83
VIT_14s0006g01820.t01	Wine grape	nucleus	76.51	70.72
KRH77972	Soybean	nucleus	75.65	70.62
KRH27562	Soybean	nucleus	75.65	70.62
Os06t0583400-01	Rice	nucleus	78.23	70.08
KRH51318	Soybean	nucleus	74.78	69.82
GSMUA_AchrUn_...	Banana	cytosol	59.05	69.54
Zm00001d053595_P004	Maize	nucleus	77.16	69.25
AT4G38130.1	Thale cress	nucleus	74.57	69.06
EES04741	Sorghum	nucleus	76.94	69.05
HORVU6Hr1G038710.1	Barley	cytosol	76.72	68.73
Solyc09g091440.2.1	Tomato	nucleus	73.71	68.67
TraesCS6A01G184100.2	Wheat	nucleus	76.72	68.59
Bra040131.1-P	Field mustard	nucleus	74.14	68.53
CDY30008	Canola	nucleus	74.14	68.53
TraesCS6B01G212600.3	Wheat	nucleus	76.72	68.46
CDY21119	Canola	nucleus	73.92	68.33
HORVU7Hr1G085870.2	Barley	nucleus	75.86	67.82
KXG20269	Sorghum	nucleus	75.65	67.76
TraesCS7D01G356800.1	Wheat	nucleus	75.43	67.44
TraesCS7B01G261800.1	Wheat	nucleus	75.43	67.44
TraesCS7A01G365600.3	Wheat	nucleus	75.0	66.54
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	69.61	63.46
PGSC0003DMT400076252	Potato	nucleus	73.06	63.25
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	58.19	62.65
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	68.75	62.55
Zm00001d046388_P001	Maize	nucleus	71.55	62.52
TraesCS6D01G171000.1	Wheat	golgi	76.94	62.2
GSMUA_Achr1P14440_001	Banana	cytosol	54.31	60.58
GSMUA_Achr2P06520_001	Banana	cytosol	47.2	60.16
GSMUA_AchrUn_...	Banana	mitochondrion	45.91	58.84
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	9.91	47.42
GSMUA_Achr6P17260_001	Banana	plastid	47.63	46.04
Zm00001d039202_P001	Maize	nucleus	13.36	37.35
Zm00001d018346_P001	Maize	mitochondrion	17.67	37.1
GSMUA_Achr7P09060_001	Banana	mitochondrion	3.02	26.92
GSMUA_Achr6P19520_001	Banana	cytosol	15.3	18.39
GSMUA_Achr10P...	Banana	plastid	17.03	18.0
GSMUA_Achr7P09050_001	Banana	cytosol	9.27	15.3
GSMUA_AchrUn_...	Banana	cytosol	14.22	14.9
GSMUA_Achr4P03250_001	Banana	cytosol	20.91	14.61
GSMUA_Achr8P20260_001	Banana	nucleus	17.46	12.8

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:GSMUA_Achr5G06320_001	EnsemblPlants:GSMUA_Achr5P06320_001	EnsemblPlants:GSMUA_Achr5T06320_001
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M0SW61
PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF127	SUPFAM:SSF52768
UniParc:UPI00029509F1	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

Probable histone deacetylase 19 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06320_001]

Coordinates

chr5:+:4636000..4642725

Molecular Weight (calculated)

51774.7 Da

IEP (calculated)

4.826

GRAVY (calculated)

-0.607

Length

464 amino acids

Sequence
(BLAST)

001: METGGGNSLP GVGQDATKRK VCYFYDPEIG NYYYGQGHPM KPHRIRMTHA LLAHYGLLGN LQTQQDQMRA LKRFNVGEDC PVFDGLYPFC QAYAGGSVGG
101: AASGFCYVND IVLAILELLK HHERVLYVDI DIHHGDGVEE AFYTTDRVMT VSFHKFGDYF PGTGDIRDIG YGKGKYYSLN VPLDDGIDDE SYQSLFKPIM
201: GKVMEVFRPG AVVLQCGADS LSGDRLGCFN LSIRGHAECV KYMRSFNVPL LLLGGGGYTI RNVARCWCYE TGVALGVEVD DKMPPHEYYE YFGPDYTLHV
301: APSNMENKNS RQQLDEIRAR LLDNLSKIQH APSVQFQERP PDTEFPEQDE DQEDPDERHD PASDMDVDGS KHPDETSRKP CSNNIQNVRI KKENMECEPK
401: DQEAQKVGGD HAKVVEPMAE DVSGPKASDV SSMSIDEPGS VKAEQQDTQN KLSETPVFAH QKPC

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.