Factsheet for Zm00001d016381_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005056_P001
Zm00001d007173_P003	nucleus
Zm00001d015058_P002
Zm00001d022440_P005	nucleus
Zm00001d023332_P001
Zm00001d023336_P001
Zm00001d029836_P001	nucleus
Zm00001d037893_P001	nucleus
Zm00001d038148_P001	nucleus
Zm00001d044680_P001
Zm00001d044682_P001
Zm00001d045970_P001	nucleus
Zm00001d052358_P001
Zm00001d053919_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	Zm00001d015058_P002	AT2G45640.1	16429262
AT4G38130.1	Zm00001d053919_P001	AT2G45640.1	16429262
AT4G38130.1	Zm00001d007173_P003	AT4G32010.1	23362207
AT4G38130.1	Zm00001d022440_P005	AT4G32010.1	23362207
AT4G38130.1	Zm00001d029836_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d037893_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d038148_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d045970_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d007173_P003	AT4G32010.1	23362207
AT4G38130.1	Zm00001d022440_P005	AT4G32010.1	23362207
AT4G38130.1	Zm00001d029836_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d037893_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d038148_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d045970_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d005056_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d023332_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d023336_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d044680_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d044682_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d052358_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d005056_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d023332_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d023336_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d044680_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d044682_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d052358_P001	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04741	Sorghum	nucleus	92.65	73.11
Zm00001d053595_P004	Maize	nucleus	92.16	72.73
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	17.16	72.16
GSMUA_AchrUn_...	Banana	cytosol	67.89	70.3
TraesCS6A01G184100.2	Wheat	nucleus	88.73	69.75
TraesCS6B01G212600.3	Wheat	nucleus	88.73	69.62
HORVU6Hr1G038710.1	Barley	cytosol	87.99	69.31
KRH60609	Soybean	nucleus	82.11	67.4
KRH27562	Soybean	nucleus	81.86	67.2
KRH77972	Soybean	nucleus	81.86	67.2
VIT_03s0038g04240.t01	Wine grape	nucleus	82.6	67.13
KRH51318	Soybean	nucleus	81.62	67.0
VIT_14s0006g01820.t01	Wine grape	nucleus	82.11	66.73
AT4G38130.1	Thale cress	nucleus	81.37	66.27
Zm00001d046388_P001	Maize	nucleus	86.03	66.1
Bra040131.1-P	Field mustard	nucleus	81.13	65.94
CDY21119	Canola	nucleus	81.13	65.94
CDY30008	Canola	nucleus	81.13	65.94
GSMUA_Achr5P06320_001	Banana	nucleus	73.04	64.22
GSMUA_Achr2P19590_001	Banana	nucleus	71.32	63.96
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	67.16	63.57
TraesCS6D01G171000.1	Wheat	golgi	88.73	63.07
GSMUA_Achr1P14440_001	Banana	cytosol	63.24	62.02
Zm00001d003813_P001	Maize	cytosol	57.6	52.57
Zm00001d050139_P001	Maize	nucleus	63.24	52.55
Zm00001d039202_P001	Maize	nucleus	20.59	50.6
Zm00001d018346_P001	Maize	mitochondrion	25.49	47.06
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	19.12	39.8
Zm00001d046348_P003	Maize	plastid	21.32	22.83
Zm00001d042974_P001	Maize	mitochondrion	11.52	21.86
Zm00001d010152_P002	Maize	cytosol	19.85	14.39
Zm00001d010162_P002	Maize	cytosol	19.85	14.39
Zm00001d018864_P002	Maize	nucleus	20.83	13.73
Zm00001d006780_P011	Maize	cytosol	23.28	13.49

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	UniProt:A0A1D6H722	ProteinID:AQK70585.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF127	SUPFAM:SSF52768
UniParc:UPI0008431B7B	InterPro:Ureohydrolase_dom_sf	EnsemblPlantsGene:Zm00001d016381	EnsemblPlants:Zm00001d016381_P001	EnsemblPlants:Zm00001d016381_T001	SEG:seg

Description

Histone deacetylase

Coordinates

chr5:-:160203687..160206309

Molecular Weight (calculated)

46098.4 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.455

Length

408 amino acids

Sequence
(BLAST)

001: MDPSSSGSGG NSLPSVGPDG QKRRVCYYYD PDVGNYYYGQ GHPMKPHRIR MTHSLLARYG LLNQMHVYRP SLASQRDLCR FHADDYIKFL RSVTPDTQQE
101: QTRLLKRFNV GEDCPVFDGL YSFCQTYAGA SVGGAFRLNH GHDIAINWSG GLHHAKKSEA SGYCYVNDIV LAILELLKYH ERVLYVDIDI HHGDGVEEAF
201: YTTDRVMTVS FHKFGDYFPG TGDIRDIGHS KGKYYSLNAP LDDGIDDESY QSLFKPIMSK VMEVFRPGAV VLQCGADSLS GDRLGCFNLS IRGHAECVRY
301: MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQELEDK MPANEYYGYF APYYTLHVTP SNMENKNTRH QLDDIRSKLL DNLRKLQHAP SVQFQERVPD
401: TEVPDVSN

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.