Factsheet for Zm00001d053595_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005056_P001
Zm00001d007173_P003	nucleus
Zm00001d015058_P002
Zm00001d022440_P005	nucleus
Zm00001d023332_P001
Zm00001d023336_P001
Zm00001d029836_P001	nucleus
Zm00001d037893_P001	nucleus
Zm00001d038148_P001	nucleus
Zm00001d044680_P001
Zm00001d044682_P001
Zm00001d045970_P001	nucleus
Zm00001d052358_P001
Zm00001d053919_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	Zm00001d015058_P002	AT2G45640.1	16429262
AT4G38130.1	Zm00001d053919_P001	AT2G45640.1	16429262
AT4G38130.1	Zm00001d007173_P003	AT4G32010.1	23362207
AT4G38130.1	Zm00001d022440_P005	AT4G32010.1	23362207
AT4G38130.1	Zm00001d029836_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d037893_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d038148_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d045970_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d007173_P003	AT4G32010.1	23362207
AT4G38130.1	Zm00001d022440_P005	AT4G32010.1	23362207
AT4G38130.1	Zm00001d029836_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d037893_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d038148_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d045970_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d005056_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d023332_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d023336_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d044680_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d044682_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d052358_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d005056_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d023332_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d023336_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d044680_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d044682_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d052358_P001	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04741	Sorghum	nucleus	96.52	96.52
Zm00001d016381_P001	Maize	nucleus	72.73	92.16
TraesCS6A01G184100.2	Wheat	nucleus	87.23	86.9
TraesCS6B01G212600.3	Wheat	nucleus	87.04	86.54
HORVU6Hr1G038710.1	Barley	cytosol	86.46	86.29
VIT_03s0038g04240.t01	Wine grape	nucleus	77.56	79.88
VIT_14s0006g01820.t01	Wine grape	nucleus	77.18	79.48
TraesCS6D01G171000.1	Wheat	golgi	87.23	78.57
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	14.7	78.35
AT4G38130.1	Thale cress	nucleus	75.24	77.64
Bra040131.1-P	Field mustard	nucleus	75.05	77.29
CDY30008	Canola	nucleus	75.05	77.29
KRH60609	Soybean	nucleus	74.27	77.26
GSMUA_Achr5P06320_001	Banana	nucleus	69.25	77.16
CDY21119	Canola	nucleus	74.85	77.09
KRH77972	Soybean	nucleus	74.08	77.06
Zm00001d046388_P001	Maize	nucleus	79.11	77.02
GSMUA_Achr2P19590_001	Banana	nucleus	67.7	76.92
KRH51318	Soybean	nucleus	73.69	76.66
KRH27562	Soybean	nucleus	73.69	76.66
GSMUA_AchrUn_...	Banana	cytosol	56.48	74.11
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	55.32	66.36
GSMUA_Achr1P14440_001	Banana	cytosol	51.64	64.18
Zm00001d050139_P001	Maize	nucleus	53.38	56.21
Zm00001d003813_P001	Maize	cytosol	47.58	55.03
Zm00001d039202_P001	Maize	nucleus	17.6	54.82
Zm00001d018346_P001	Maize	mitochondrion	21.47	50.23
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	15.09	39.8
Zm00001d046348_P003	Maize	plastid	17.6	23.88
Zm00001d042974_P001	Maize	mitochondrion	9.28	22.33
Zm00001d006780_P011	Maize	cytosol	20.5	15.06
Zm00001d010162_P002	Maize	cytosol	16.25	14.92
Zm00001d010152_P002	Maize	cytosol	16.25	14.92
Zm00001d018864_P002	Maize	nucleus	16.63	13.89

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	EntrezGene:541931	EMBL:AF384032	ProteinID:AQK59776.1
EMBL:BT042639	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625
PANTHER:PTHR10625:SF127	UniProt:Q94F82	SUPFAM:SSF52768	UniParc:UPI00000A896E	InterPro:Ureohydrolase_dom_sf	EnsemblPlantsGene:Zm00001d053595
EnsemblPlants:Zm00001d053595_P004	EnsemblPlants:Zm00001d053595_T004	SEG:seg	:	:	:

Description

RPD3 histone deacetylase homolog RPD3 histone deacetylase homolog

Coordinates

chr4:-:235825667..235832657

Molecular Weight (calculated)

57934.8 Da

IEP (calculated)

5.537

GRAVY (calculated)

-0.621

Length

517 amino acids

Sequence
(BLAST)

001: MDPSSAGSGG NSLPSVGPDG QKRRVCYFYD PDVGNYYYGQ GHPMKPHRIR MTHSLLARYG LLNQMQVYRP NPARDRDLCR FHADDYINFL RSVTPETQQD
101: QIRLLKRFNV GEDCPVFDGL YSFCQTYAGA SVGGAVKLNH GHDIAINWSG GLHHAKKCEA SGFCYVNDIV LAILELLKHH ERVLYVDIDI HHGDGVEEAF
201: YTTDRVMTVS FHKFGDYFPG TGDIRDIGHS KGKYYSLNVP LDDGIDDESY QSLFKPIMGK VMEVFRPGAV VLQCGADSLS GDRLGCFNLS IKGHAECVRY
301: MRSFNVPLLL LGGGGYTIRN VARCWCYETG VALGQEPEDK MPVNEYYEYF GPDYTLHVAP SNMENKNTRQ QLDDIRSKLL DNLSKLRHAP SVHFQERVPD
401: TEIPEQDEDQ DDPDERHDPD SDMEVDDHKA VEESSRRSIL GIKIKREFGE NATRVQDGGR VASEHRGLEP MAEDIGSSKQ APQADASAMA IDEPSNVKNE
501: PESSTKLQGQ AAAYHKP

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.