Factsheet for Zm00001d018346_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005056_P001
Zm00001d007173_P003	nucleus
Zm00001d015058_P002
Zm00001d022440_P005	nucleus
Zm00001d023332_P001
Zm00001d023336_P001
Zm00001d029836_P001	nucleus
Zm00001d037893_P001	nucleus
Zm00001d038148_P001	nucleus
Zm00001d044680_P001
Zm00001d044682_P001
Zm00001d045970_P001	nucleus
Zm00001d052358_P001
Zm00001d053919_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	Zm00001d015058_P002	AT2G45640.1	16429262
AT4G38130.1	Zm00001d053919_P001	AT2G45640.1	16429262
AT4G38130.1	Zm00001d007173_P003	AT4G32010.1	23362207
AT4G38130.1	Zm00001d022440_P005	AT4G32010.1	23362207
AT4G38130.1	Zm00001d029836_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d037893_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d038148_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d045970_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d007173_P003	AT4G32010.1	23362207
AT4G38130.1	Zm00001d022440_P005	AT4G32010.1	23362207
AT4G38130.1	Zm00001d029836_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d037893_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d038148_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d045970_P001	AT4G32010.1	23362207
AT4G38130.1	Zm00001d005056_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d023332_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d023336_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d044680_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d044682_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d052358_P001	AT5G01900.1	18776063
AT4G38130.1	Zm00001d005056_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d023332_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d023336_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d044680_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d044682_P001	AT5G22570.1	18776063
AT4G38130.1	Zm00001d052358_P001	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039202_P001	Maize	nucleus	64.71	86.14
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	37.56	85.57
Zm00001d016381_P001	Maize	nucleus	47.06	25.49
Zm00001d046388_P001	Maize	nucleus	57.47	23.92
AT4G38130.1	Thale cress	nucleus	49.32	21.76
Bra040131.1-P	Field mustard	nucleus	49.32	21.71
VIT_14s0006g01820.t01	Wine grape	nucleus	49.32	21.71
VIT_03s0038g04240.t01	Wine grape	nucleus	49.32	21.71
CDY21119	Canola	nucleus	49.32	21.71
CDY30008	Canola	nucleus	49.32	21.71
KRH51318	Soybean	nucleus	48.42	21.53
KRH60609	Soybean	nucleus	48.42	21.53
Zm00001d053595_P004	Maize	nucleus	50.23	21.47
KRH27562	Soybean	nucleus	47.06	20.93
KRH77972	Soybean	nucleus	46.61	20.72
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	47.51	20.63
GSMUA_AchrUn_...	Banana	cytosol	34.84	19.54
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	44.8	19.41
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	16.29	18.37
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	35.29	18.1
GSMUA_Achr5P06320_001	Banana	nucleus	37.1	17.67
GSMUA_Achr2P19590_001	Banana	nucleus	34.84	16.92
Zm00001d050139_P001	Maize	nucleus	37.1	16.7
GSMUA_Achr1P14440_001	Banana	cytosol	30.77	16.35
Zm00001d003813_P001	Maize	cytosol	27.15	13.42
Zm00001d046348_P003	Maize	plastid	14.93	8.66
Zm00001d018864_P002	Maize	nucleus	15.38	5.49
Zm00001d042974_P001	Maize	mitochondrion	4.52	4.65
Zm00001d010162_P002	Maize	cytosol	11.31	4.44
Zm00001d010152_P002	Maize	cytosol	11.31	4.44
Zm00001d006780_P011	Maize	cytosol	12.67	3.98

Protein Annotations

Gene3D:3.40.800.20	MapMan:35.1	UniProt:A0A1D6HMZ8	ProteinID:AQK75684.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF127
SUPFAM:SSF52768	UniParc:UPI000843E0F3	InterPro:Ureohydrolase_dom_sf	EnsemblPlantsGene:Zm00001d018346	EnsemblPlants:Zm00001d018346_P001	EnsemblPlants:Zm00001d018346_T001

Description

Histone deacetylase 19

Coordinates

chr5:-:218950604..218951356

Molecular Weight (calculated)

25064.1 Da

IEP (calculated)

9.687

GRAVY (calculated)

-0.572

Length

221 amino acids

Sequence
(BLAST)

001: MAMMRGKKAA VMWGWSGSKV NGCKVGARAL TDTPFAVLCG GGNSLPTTGA DGSKRRVCYF YDAEVGNCYY EHCHPMKPHR IRMTHALLGR YGLLDQMQVF
101: RPHPARDRDL CRFHADDYVS FLRSVTPETQ QDQIRALKRF SVGEDCPHLR RSLQFLPDVR GGLRWRLEVS EDGRGAWHGG DDGRQGCDLA YDGIRAPKRD
201: LRAWLAGGIR QARRVVWERE I

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.