Factsheet for Os02t0214900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0122000-01
Os07t0679700-01	nucleus
Os11t0117400-00
Os11t0117500-01
Os11t0117600-00
Os12t0116600-01
Os12t0116700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	Os02t0122000-01	AT2G45640.1	16429262
AT4G38130.1	Os07t0679700-01	AT4G32010.1	23362207
AT4G38130.1	Os07t0679700-01	AT4G32010.1	23362207
AT4G38130.1	Os11t0117400-00	AT5G01900.1	18776063
AT4G38130.1	Os11t0117500-01	AT5G01900.1	18776063
AT4G38130.1	Os11t0117600-00	AT5G01900.1	18776063
AT4G38130.1	Os12t0116600-01	AT5G01900.1	18776063
AT4G38130.1	Os12t0116700-01	AT5G01900.1	18776063
AT4G38130.1	Os11t0117400-00	AT5G22570.1	18776063
AT4G38130.1	Os11t0117500-01	AT5G22570.1	18776063
AT4G38130.1	Os11t0117600-00	AT5G22570.1	18776063
AT4G38130.1	Os12t0116600-01	AT5G22570.1	18776063
AT4G38130.1	Os12t0116700-01	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	95.49	95.68
EES04741	Sorghum	nucleus	77.45	76.4
TraesCS6A01G184100.2	Wheat	nucleus	77.25	75.92
TraesCS6B01G212600.3	Wheat	nucleus	77.06	75.58
HORVU6Hr1G038710.1	Barley	cytosol	76.67	75.48
Os06t0583400-01	Rice	nucleus	75.49	74.32
AT4G38130.1	Thale cress	nucleus	70.39	71.66
VIT_14s0006g01820.t01	Wine grape	nucleus	70.39	71.51
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	13.53	71.13
VIT_03s0038g04240.t01	Wine grape	nucleus	69.8	70.92
CDY30008	Canola	nucleus	69.61	70.72
Bra040131.1-P	Field mustard	nucleus	69.41	70.52
CDY21119	Canola	nucleus	69.41	70.52
KRH60609	Soybean	nucleus	68.04	69.82
KRH51318	Soybean	nucleus	67.84	69.62
KRH27562	Soybean	nucleus	67.84	69.62
GSMUA_AchrUn_...	Banana	cytosol	53.73	69.54
KRH77972	Soybean	nucleus	67.65	69.42
GSMUA_Achr2P19590_001	Banana	nucleus	61.57	69.01
GSMUA_Achr5P06320_001	Banana	nucleus	62.55	68.75
TraesCS6D01G171000.1	Wheat	golgi	77.25	68.64
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	53.33	63.11
GSMUA_Achr1P14440_001	Banana	cytosol	51.37	62.98
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	54.51	60.7
Zm00001d039202_P001	Maize	nucleus	15.49	47.59
Os11t0200000-01	Rice	cytosol	41.18	46.05
Zm00001d018346_P001	Maize	mitochondrion	19.41	44.8
Os04t0409600-01	Rice	cytosol	16.08	43.62
Os06t0571100-01	Rice	plastid	18.04	26.14
Os05t0440250-01	Rice	cytosol, nucleus, plastid	16.86	21.94
Os12t0182700-01	Rice	mitochondrion	15.69	18.06
Os05t0440300-01	Rice	cytosol, nucleus, plastid	13.73	17.72
Os07t0602200-01	Rice	cytosol, nucleus, plastid	21.96	16.12
Os07t0164100-01	Rice	nucleus	17.25	14.13
Os05t0440100-02	Rice	cytosol	2.35	4.38
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	EntrezGene:4328717	EMBL:AF513384	ProteinID:BAD25048.1
ProteinID:BAF08198.1	ProteinID:BAS77624.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016301	GO:GO:0016575	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	EnsemblPlantsGene:Os02g0214900	EnsemblPlants:Os02t0214900-01	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270
PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF127	UniProt:Q7Y0Y6	SUPFAM:SSF52768	UniParc:UPI00001A305C
InterPro:Ureohydrolase_dom_sf	RefSeq:XP_015623652.1	SEG:seg	:	:	:

Description

CLASS-1 TYPE HISTONE DEACETYLASE 3Class-I type histone deacetylase, Reproductive development, Seed morphology (Os02t0214900-01);Similar to Histone deacetylase. (Os02t0214900-02)

Coordinates

chr2:-:6424577..6430587

Molecular Weight (calculated)

56507.5 Da

IEP (calculated)

5.756

GRAVY (calculated)

-0.475

Length

510 amino acids

Sequence
(BLAST)

001: MDPSSAGAGG NSLASASCGD AQKRRVCYFY DPEVGNYYYG QGHPMKPHRV RMTHALLAHY GLLAPAKMEV LRPLPARGID LCRFHSDDYV AFLRAVTPET
101: QLGQVRALRR FNIGPDCPVF DGLYAYCQTY AGASVGAAVK LNHGTHDIAI NWSGGLHHAK KSEASGFCYV NDIVLAILEL LKLHERVLYI DIDIHHGDGV
201: EEAFYTTNRV MTVSFHKFGD YFPGTGDIRD IGYSEGKYYC LNVPLDDGID DDSYQSIFKP IISKVMEMYR PGAVVLQCGA DSLSGDRLGC FNLSGKGHAE
301: CVKFMRSFNV PLLLLGGGGY TIRNVARCWC YETGVALGEE LQEKLPYNEY YEYFGPEYSL YVAASNMENR NTNKQLEEIK CNILDNLSKL QHAPSVQFQE
401: RIPETKLPEP DEDQEDPDER HDPDSDMVLD DHKPTGHSAR SLIHNIGVKR EITETETKDQ HGKRLTTEHK GPEPMAEDLG SSKQAPTADA NAVAVNAPGN
501: ARNEPGSSPK

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.