Factsheet for Os12t0182700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

mitochondrion: 19505461
plastid: 19505461

gfp PMID: 19505461 doi

PJ Chung, YS Kim, SH Park, BH Nahm, JK Kim

School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042974_P001	Maize	mitochondrion	42.89	88.37
TraesCS5A01G119300.2	Wheat	mitochondrion	83.52	83.33
TraesCS5D01G126600.1	Wheat	mitochondrion, plastid, vacuole	83.07	82.88
EES01710	Sorghum	plastid	79.23	81.63
TraesCS5B01G121300.1	Wheat	vacuole	83.07	81.24
HORVU5Hr1G037920.1	Barley	cytosol	82.84	81.19
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	45.37	75.85
GSMUA_AchrUn_...	Banana	cytosol	67.72	67.72
AT4G33470.1	Thale cress	plastid	62.3	65.25
VIT_04s0044g01510.t01	Wine grape	mitochondrion	64.11	64.99
KRH59585	Soybean	plastid	61.17	64.52
CDX68980	Canola	mitochondrion, plastid	61.17	63.76
CDX75356	Canola	plastid	61.17	63.76
Bra011444.1-P	Field mustard	golgi, vacuole	61.4	60.58
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	24.38	32.05
Os05t0440250-01	Rice	cytosol, nucleus, plastid	19.19	21.68
Os05t0440300-01	Rice	cytosol, nucleus, plastid	18.28	20.51
Os06t0571100-01	Rice	plastid	14.67	18.47
Os07t0164100-01	Rice	nucleus	25.73	18.3
Os07t0602200-01	Rice	cytosol, nucleus, plastid	27.77	17.7
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	18.28	17.69
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	18.51	16.11
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	18.06	15.69
Os11t0200000-01	Rice	cytosol	15.35	14.91
Os06t0583400-01	Rice	nucleus	17.38	14.86
Os04t0409600-01	Rice	cytosol	4.97	11.7
Os05t0440100-02	Rice	cytosol	1.35	2.19
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EntrezGene:4351682	ProteinID:ABA95964.1	EMBL:AK072557	ProteinID:BAF29341.1
ProteinID:BAT16163.1	ncoils:Coil	ProteinID:EEE52876.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0042903	GO:GO:0043014	GO:GO:0043621	GO:GO:0048487	GO:GO:0051721	GO:GO:0070932
GO:GO:0090042	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlantsGene:Os12g0182700
EnsemblPlants:Os12t0182700-01	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF175	UniProt:Q2QWU2
SUPFAM:SSF52768	UniParc:UPI000068191A	InterPro:Ureohydrolase_dom_sf	RefSeq:XP_015618357.1	:	:

Description

HISTONE DEACETYLASE 10Histone deacetylase superfamily protein. (Os12t0182700-01)

Coordinates

chr12:+:4194063..4198878

Molecular Weight (calculated)

48102.6 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.114

Length

443 amino acids

Sequence
(BLAST)

001: MEQLWVPSLP ILGGRILPML RHYCGFGSHH PLTWRSLQIT GRKQKHNGCW IAYCLPSHNG TSISDTNGVR KDLALPDNLL RDAHILYCTS PAMGHNKEAH
101: PETNKRVPAI VDALEKLELT SKHRGSQVLE IQDFQPASLD DIALVHSRSY ITGLEKAMSR ASDEGLIFIE GTGPTYATQT TFQECLLSAG AGITLVDSVV
201: AASKLGPKPP LGFALVRPPG HHAVPEGPMG FCVFGNIAVA ARYAQNQHGL KRVMIIDFDV HHGNGTCDAF YEDPDIFFLS THQLGSYPGT GKIHQVGQGN
301: GEGTTLNLPL PGGSGDYAMR CAFDEVIAPA AQRFKPDIIL VSAGYDAHAL DPLAGLQFTT GTFYMLAARI REVAAELCGG RCVFFLEGGY NLESLSSSVA
401: DTFRAFLGEP SLAARFDDPA MLYEEPTRKI REAIDKAKHL HSL

Best Arabidopsis Sequence Match ( AT4G33470.1 )
(BLAST)

001: MSMALIVRPF FVPGSAGISG SRNICKKNQW RKYLLKPSGS SINCSFSTEK NPLLPSIQQL ADARLIYSVS AALGHNKESH PECSARVPAI VNALEMNELT
101: PKFRGSQILE LANFKTATVE DIANVHDKAY VFGLEKAMDE ASDSGLIFIE GSGPTYATST TFQDSLIAAG AGMALVDSVI AASRNSVDPP IGFALIRPPG
201: HHAVPKGPMG FCVFGNVAIA ARHAQRTHGL KRIFIIDFDV HHGNGTNDAF TEDPDIFFLS THQDGSYPGT GKISDIGKGK GEGTTLNLPL PGGSGDIAMR
301: TVFEEIIVPC AQRFKPDIIL VSAGYDAHVL DPLANLQFTT ATYYSLAKDI KRLAKEVCGG RCVFFLEGGY NLESLSSSVA DSFRALLGED SLASEFDNPA
401: YLYDEPMRKV RDAIQRAKSI HCL

Arabidopsis Description

HDA14Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A178V1U6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.