Skip to main content
crop-pal logo
Rice
Search for another protein from :
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 3
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Os05t0440100-02

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G08460.1 Os05t0440100-02 AT1G08460.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os07t0602200-01 Rice cytosol, nucleus, plastid 10.58 4.17
GSMUA_Achr7P09060_001 Banana mitochondrion 0.73 3.85
VIT_06s0080g00210.t01 Wine grape nucleus 3.65 2.87
Os05t0440250-01 Rice cytosol, nucleus, plastid 4.01 2.81
Os05t0440300-01 Rice cytosol, nucleus, plastid 4.01 2.78
Solyc06g074080.2.1 Tomato cytosol 3.65 2.6
PGSC0003DMT400015085 Potato cytoskeleton, cytosol, nucleus 3.28 2.37
Os02t0214900-01 Rice cytoskeleton, cytosol, nucleus 4.38 2.35
Os02t0215200-02 Rice cytoskeleton, cytosol, nucleus 4.01 2.16
Os06t0583400-01 Rice nucleus 4.01 2.12
KRH26679 Soybean cytosol 2.55 1.84
CDY22682 Canola cytosol 2.55 1.81
Os08t0344100-01 Rice cytoskeleton, cytosol, nucleus 2.92 1.75
AT1G08460.1 Thale cress cytosol 2.19 1.59
Bra031628.1-P Field mustard cytosol 2.19 1.55
CDY06315 Canola cytosol 2.19 1.55
Os12t0182700-01 Rice mitochondrion 2.19 1.35
Os07t0164100-01 Rice nucleus 2.55 1.12
Os11t0200000-01 Rice cytosol 1.46 0.88
Os06t0571100-01 Rice plastid 1.09 0.85
Os07t0164300-01 Rice plasma membrane 0.0 0.0
Os04t0409600-01 Rice cytosol 0.0 0.0
GSMUA_Achr7P09050_001 Banana cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Os05t0440100-02EnsemblPlantsGene:Os05g0440100EntrezGene:9270028GO:GO:0008150GO:GO:0009987GO:GO:0071284
InterPro:LRAT-like_domPANTHER:PTHR13943PANTHER:PTHR13943:SF44PFAM:PF04970ProteinID:AAU90086.1ProteinID:BAH93176.1
ProteinID:BAS94234.1ProteinID:EEE63867.1RefSeq:XP_015640135.1SEG:segUniParc:UPI00004447F9UniProt:Q60DG8
MapMan:35.2:::::
Description
Similar to (RAP Annotation release2) Histone deacetylase superfamily protein. (Os05t0440100-01);Similar to (RAP Annotation release2) Histone deacetylase superfamily protein. (Os05t0440100-02)
Coordinates
chr5:-:21557366..21559967
Molecular Weight (calculated)
29030.8 Da
IEP (calculated)
7.336
GRAVY (calculated)
0.164
Length
274 amino acids
Sequence
(BLAST)
001: MGLLSNRIGK ETLKAGDHIY SWRAAWVYAH HGIYVGDDKV IHFTRGRGQE VGTGTFIDLL LMSSGPNTNT PCSICNNEGA TTNTETNGVV SSCLNCFLSG
101: GALYRFEYAV NPALFLAKAR GGTCTLAPTD PDEVVVRRAN HLLSNGFRCY NLFKSNCEDF AIYCKTGLLV AEQGVVGQSG QAISIIGGPL AAVISTPFRL
201: VTTNIYGMAV MAVGVYCASR YAADIGNRRD VLKVEVEDLT AGLASGRIRA VENISQLVAP AEAQGLAVTA PVAA
Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)
001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
Arabidopsis Description
AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.