Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00210.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08460.1 | VIT_06s0080g00210.t01 | AT1G08460.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015085 | Potato | cytoskeleton, cytosol, nucleus | 80.17 | 73.61 |
| Solyc06g074080.2.1 | Tomato | cytosol | 80.75 | 72.99 |
| KRH26679 | Soybean | cytosol | 78.16 | 71.39 |
| HORVU1Hr1G074110.1 | Barley | cytosol | 75.29 | 67.35 |
| TraesCS1B01G284500.1 | Wheat | cytosol, nucleus, plastid | 75.86 | 67.18 |
| EES19606 | Sorghum | cytosol | 75.0 | 66.92 |
| TraesCS1A01G275300.1 | Wheat | cytosol, nucleus, plastid | 75.0 | 66.75 |
| AT1G08460.1 | Thale cress | cytosol | 71.84 | 66.31 |
| TraesCS1D01G274900.1 | Wheat | cytosol, nucleus, plastid | 68.39 | 65.03 |
| Bra031628.1-P | Field mustard | cytosol | 71.26 | 64.25 |
| CDY22682 | Canola | cytosol | 70.98 | 63.99 |
| CDY06315 | Canola | cytosol | 69.83 | 62.95 |
| Zm00001d010162_P002 | Maize | cytosol | 57.18 | 35.35 |
| Zm00001d010152_P002 | Maize | cytosol | 57.18 | 35.35 |
| VIT_04s0044g01510.t01 | Wine grape | mitochondrion | 25.86 | 20.59 |
| VIT_06s0061g01510.t01 | Wine grape | cytosol, mitochondrion, nucleus | 22.41 | 18.14 |
| VIT_15s0021g00610.t01 | Wine grape | cytosol | 22.13 | 17.91 |
| VIT_17s0000g09070.t01 | Wine grape | cytosol | 22.41 | 16.81 |
| VIT_03s0038g04240.t01 | Wine grape | nucleus | 22.13 | 15.34 |
| VIT_14s0006g01820.t01 | Wine grape | nucleus | 21.84 | 15.14 |
| VIT_17s0000g07280.t01 | Wine grape | cytosol | 27.87 | 15.02 |
| VIT_17s0000g04120.t01 | Wine grape | nucleus | 29.89 | 14.92 |
| VIT_04s0008g00910.t01 | Wine grape | plastid | 15.23 | 14.76 |
| VIT_13s0106g00170.t01 | Wine grape | cytosol, golgi, plastid | 14.08 | 14.54 |
| GSMUA_Achr7P09050_001 | Banana | cytosol | 11.21 | 13.88 |
| GSMUA_Achr7P09060_001 | Banana | mitochondrion | 0.86 | 5.77 |
| Os05t0440100-02 | Rice | cytosol | 2.87 | 3.65 |
Protein Annotations
| EntrezGene:100255252 | wikigene:100255252 | MapMan:12.3.2.1.2 | Gene3D:3.40.800.20 | EMBL:AM486630 | ProteinID:CAN79825 |
| ProteinID:CAN79825.1 | ProteinID:CBI28344 | ProteinID:CBI28344.3 | UniProt:D7TCX1 | EMBL:FN595757 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016787 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 |
| EntrezGene:LOC100255252 | wikigene:LOC100255252 | PFAM:PF00850 | PRINTS:PR01270 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF121 |
| SUPFAM:SSF52768 | UniParc:UPI0001BE2EAC | InterPro:Ureohydrolase_dom_sf | ArrayExpress:VIT_06s0080g00210 | EnsemblPlantsGene:VIT_06s0080g00210 | EnsemblPlants:VIT_06s0080g00210.t01 |
| unigene:Vvi.11979 | RefSeq:XP_002277237 | RefSeq:XP_002277237.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:+:20001888..20006704
Molecular Weight (calculated)
37651.8 Da
IEP (calculated)
5.811
GRAVY (calculated)
-0.158
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPGFLDVLE KHPENSERLR NMVSILKRGP ISPYISWHSG TPALISHLLS FHTPEYINEL VQADRDGGKE LCSGTFLNPG SWDAALLAAG TALSAMKHIL
101: DGHGKIAYAL VRPPGHHAQP SQADGYCFLN NAGLAVQLAL NSGCAKVAVI DIDVHYGNGT AEGFYHSDKV LTISLHMNHG SWGPSHPQSG SVDEIGVGEG
201: FGYNLNIPLP NGTGDRGYAY AMNQLVVPAI QKYEPEMMVL VVGQDSSAFD PNGRQCLTME GYREIGQIVR KLADKYSDGH LLIVQEGGYQ VTYSAYCLHA
301: TLEGVLNLPS PLLSDPIAYY PEDELMTTKV IDAIKKFQNS TAPFLKGG
101: DGHGKIAYAL VRPPGHHAQP SQADGYCFLN NAGLAVQLAL NSGCAKVAVI DIDVHYGNGT AEGFYHSDKV LTISLHMNHG SWGPSHPQSG SVDEIGVGEG
201: FGYNLNIPLP NGTGDRGYAY AMNQLVVPAI QKYEPEMMVL VVGQDSSAFD PNGRQCLTME GYREIGQIVR KLADKYSDGH LLIVQEGGYQ VTYSAYCLHA
301: TLEGVLNLPS PLLSDPIAYY PEDELMTTKV IDAIKKFQNS TAPFLKGG
001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
Arabidopsis Description
HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.