Factsheet for VIT_04s0044g01510.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042974_P001	Maize	mitochondrion	39.82	80.93
KRH59585	Soybean	plastid	72.77	75.71
AT4G33470.1	Thale cress	plastid	66.82	69.03
CDX68980	Canola	mitochondrion, plastid	66.59	68.47
CDX75356	Canola	plastid	66.59	68.47
EES01710	Sorghum	plastid	65.22	66.28
TraesCS5D01G126600.1	Wheat	mitochondrion, plastid, vacuole	66.13	65.09
TraesCS5A01G119300.2	Wheat	mitochondrion	66.13	65.09
Bra011444.1-P	Field mustard	golgi, vacuole	66.82	65.03
GSMUA_AchrUn_...	Banana	cytosol	65.9	65.01
TraesCS5B01G121300.1	Wheat	vacuole	67.05	64.68
HORVU5Hr1G037920.1	Barley	cytosol	66.59	64.38
Os12t0182700-01	Rice	mitochondrion	64.99	64.11
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	29.52	38.28
VIT_06s0080g00210.t01	Wine grape	nucleus	20.59	25.86
VIT_17s0000g07280.t01	Wine grape	cytosol	24.71	16.72
VIT_17s0000g04120.t01	Wine grape	nucleus	26.54	16.64
VIT_17s0000g09070.t01	Wine grape	cytosol	17.62	16.59
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	15.79	16.05
VIT_15s0021g00610.t01	Wine grape	cytosol	15.79	16.05
VIT_04s0008g00910.t01	Wine grape	plastid	13.04	15.88
VIT_03s0038g04240.t01	Wine grape	nucleus	17.16	14.94
VIT_14s0006g01820.t01	Wine grape	nucleus	17.16	14.94

Protein Annotations

EntrezGene:100244854	wikigene:100244854	MapMan:12.3.2.1.2	Gene3D:3.40.800.20	ProteinID:CBI37522	ProteinID:CBI37522.3
UniProt:D7U4C5	EMBL:FN596506	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004407
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	EntrezGene:LOC100244854	wikigene:LOC100244854	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625
PANTHER:PTHR10625:SF175	SUPFAM:SSF52768	TIGR:TC55374	UniParc:UPI00019831B1	InterPro:Ureohydrolase_dom_sf	ArrayExpress:VIT_04s0044g01510
EnsemblPlantsGene:VIT_04s0044g01510	EnsemblPlants:VIT_04s0044g01510.t01	unigene:Vvi.1478	RefSeq:XP_002267516	RefSeq:XP_002267516.1	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:D7U4C5]

Coordinates

chr4:-:23072296..23108555

Molecular Weight (calculated)

47139.2 Da

IEP (calculated)

6.867

GRAVY (calculated)

-0.065

Length

437 amino acids

Sequence
(BLAST)

001: MLLLQKTLPS FTGSLVLLVQ HNVCKLKNHG RFGSDTKFSG DGYFRKHLKS GRRYFSKSRG PFVSCSLVPS TSELSDARVI YCVAPAMGHN QESHPESNFR
101: VPAIVSALEK MELSPMFRGS EILELHSFSP ASVEDIASVH TKAYVSGLEK SMDQASQKGI IYIDGSGPTY ATATTFQESL LAAGAGITLV DSVVAASKSS
201: QDPPMGFALI RPPGHHAIPK GPMGFCVFGN VAIAARYAQR VHGLKRVFII DFDVHHGNGT NDAFYDDPDI FFLSTHQDGS YPGTGKIDEV GHGSGEGATL
301: NLPLPGGSGD IAMRTVFDEV IVPSAQRFKP DIILVSAGYD GHVLDPLASL QFTTGTYYML ASNIKQLAKD LCGGRCVFFL EGGYNLSSLS YSVADSFRAF
401: LGEPSLASEF DDPAILYEEP STKVKQAIQK VKHLHSL

Best Arabidopsis Sequence Match ( AT4G33470.1 )
(BLAST)

001: MSMALIVRPF FVPGSAGISG SRNICKKNQW RKYLLKPSGS SINCSFSTEK NPLLPSIQQL ADARLIYSVS AALGHNKESH PECSARVPAI VNALEMNELT
101: PKFRGSQILE LANFKTATVE DIANVHDKAY VFGLEKAMDE ASDSGLIFIE GSGPTYATST TFQDSLIAAG AGMALVDSVI AASRNSVDPP IGFALIRPPG
201: HHAVPKGPMG FCVFGNVAIA ARHAQRTHGL KRIFIIDFDV HHGNGTNDAF TEDPDIFFLS THQDGSYPGT GKISDIGKGK GEGTTLNLPL PGGSGDIAMR
301: TVFEEIIVPC AQRFKPDIIL VSAGYDAHVL DPLANLQFTT ATYYSLAKDI KRLAKEVCGG RCVFFLEGGY NLESLSSSVA DSFRALLGED SLASEFDNPA
401: YLYDEPMRKV RDAIQRAKSI HCL

Arabidopsis Description

HDA14Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A178V1U6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.