Factsheet for VIT_17s0000g04120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56687	Soybean	nucleus	47.06	78.66
KRH03799	Soybean	nucleus	54.09	69.43
PGSC0003DMT400014582	Potato	nucleus	56.96	65.08
CDY24487	Canola	cytosol, nucleus, peroxisome	50.65	64.89
CDX82341	Canola	nucleus	41.32	64.86
Solyc03g119730.2.1	Tomato	nucleus	56.24	64.26
AT3G18520.2	Thale cress	cytosol	50.79	62.77
CDX92243	Canola	nucleus	50.5	61.75
Bra022329.1-P	Field mustard	nucleus	50.22	61.4
Bra001708.1-P	Field mustard	nucleus	36.3	60.67
GSMUA_Achr8P20260_001	Banana	nucleus	49.78	54.82
TraesCS5D01G076100.1	Wheat	nucleus	46.63	53.1
TraesCS5A01G065300.1	Wheat	nucleus	46.34	52.61
Zm00001d018864_P002	Maize	nucleus	46.48	52.34
TraesCS5B01G072100.1	Wheat	nucleus	46.05	52.28
HORVU5Hr1G017550.9	Barley	nucleus	45.91	52.12
OQU88485	Sorghum	nucleus	45.91	50.87
Os07t0164100-01	Rice	nucleus	44.91	50.24
CDY52901	Canola	nucleus	31.28	46.78
VIT_06s0080g00210.t01	Wine grape	nucleus	14.92	29.89
VIT_04s0044g01510.t01	Wine grape	mitochondrion	16.64	26.54
VIT_17s0000g07280.t01	Wine grape	cytosol	23.53	25.39
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	12.2	19.77
VIT_15s0021g00610.t01	Wine grape	cytosol	12.2	19.77
VIT_17s0000g09070.t01	Wine grape	cytosol	12.63	18.97
VIT_03s0038g04240.t01	Wine grape	nucleus	13.34	18.53
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	8.9	18.4
VIT_14s0006g01820.t01	Wine grape	nucleus	13.2	18.33
VIT_04s0008g00910.t01	Wine grape	plastid	8.61	16.71
Os07t0164300-01	Rice	plasma membrane	4.73	10.89

Protein Annotations

EntrezGene:100268092	wikigene:100268092	MapMan:12.3.2.1.2	Gene3D:3.40.800.20	ProteinID:CBI15417	ProteinID:CBI15417.3
UniProt:D7SIV6	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009294
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR001876
InterPro:IPR037138	EntrezGene:LOC100268092	wikigene:LOC100268092	PFAM:PF00850	PRINTS:PR01270	ScanProsite:PS01358
PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	SUPFAM:SSF52768	UniParc:UPI0001BE0C4B	InterPro:Ureohydrolase_dom_sf	ArrayExpress:VIT_17s0000g04120
EnsemblPlantsGene:VIT_17s0000g04120	EnsemblPlants:VIT_17s0000g04120.t01	unigene:Vvi.22586	RefSeq:XP_002274270	RefSeq:XP_002274270.2	InterPro:Znf_RanBP2
SEG:seg	:	:	:	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:D7SIV6]

Coordinates

chr17:+:4198579..4225049

Molecular Weight (calculated)

76617.7 Da

IEP (calculated)

6.185

GRAVY (calculated)

-0.348

Length

697 amino acids

Sequence
(BLAST)

001: MNKLIGMDII GETKYKYNKI EGLNAKSPAL NELDRYGAQS PSSLPEFAVS IRAALPGSLS GAKVWPSKCK RTCSSFMRGC DQNQDLHEGM ILNETCYVNS
101: EHNMVSETLQ NTRLMDGKAE NNLHDQNDQI LLEGFNGQHE NVGLDGINAT PCSDENCREE NTSGTSSRDM ADNLNGSMLP DIISKRVRQQ KEMTLEDMYN
201: DQYDYDDDDD SDWEPLPGPT AVIRWFCVNC TMANQDDVVH CDICGEHKES GILKHGFFAS PFSQEAGLIH TDSEVVERCQ DSRSPNLTSN NSTAVGFDER
301: MLLHSEVEMK SHPHPERPDR LRAIAASLAT AGIFPGKCYP ILAREITREE LQMVHSLEHV ETVELTSRIL SSYFTPDTYA NEHSALAARL AAGLCADLAS
401: AIFSGRAKNG FALVRPPGHH AGVSQAMGFC LHNNAAVAAL ASQVSGAKRV LIVDWDVHHG NGTQEIFEQN KSVLYISLHR HEGGNFYPGT GASHEVGSMG
501: AEGYCVNIPW SRGGVGDNDY IFAFQHVVLP IASEFAPDFT IISAGFDAAR GDPLGCCDVT PAGFAKMTDM LNVLSGGKLL VILEGGYNLR SISSSATAVI
601: KVLLGETPGC ELDNCLPSKS GLRTVLEVLK IQMNFWSTLA STLTKLESEW GSCLVENRKK HTKKRRRAVA PKPWKWGRKT LLYHLLSGHL RYKSKRI

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.