Factsheet for Solyc03g119730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014582	Potato	nucleus	95.9	95.9
KRH56687	Soybean	nucleus	50.66	74.1
CDX82341	Canola	nucleus	46.72	64.19
KRH03799	Soybean	nucleus	57.05	64.09
CDY24487	Canola	cytosol, nucleus, peroxisome	55.74	62.5
Bra001708.1-P	Field mustard	nucleus	41.15	60.19
CDX92243	Canola	nucleus	55.57	59.47
Bra022329.1-P	Field mustard	nucleus	55.57	59.47
AT3G18520.2	Thale cress	cytosol	54.59	59.04
VIT_17s0000g04120.t01	Wine grape	nucleus	64.26	56.24
GSMUA_Achr8P20260_001	Banana	nucleus	55.9	53.87
TraesCS5D01G076100.1	Wheat	nucleus	51.8	51.63
TraesCS5A01G065300.1	Wheat	nucleus	51.64	51.3
TraesCS5B01G072100.1	Wheat	nucleus	51.15	50.81
Zm00001d018864_P002	Maize	nucleus	51.48	50.73
HORVU5Hr1G017550.9	Barley	nucleus	50.98	50.65
Os07t0164100-01	Rice	nucleus	51.31	50.24
OQU88485	Sorghum	nucleus	51.15	49.6
CDY52901	Canola	nucleus	34.92	45.71
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	14.75	33.96
Solyc06g074080.2.1	Tomato	cytosol	18.36	29.09
Solyc03g115150.2.1	Tomato	cytosol	24.92	23.49
Solyc11g067020.1.1	Tomato	cytosol	13.11	18.6
Solyc03g112410.1.1	Tomato	cytosol	13.28	18.04
Solyc08g065350.2.1	Tomato	cytosol	9.84	17.29
Solyc09g091440.2.1	Tomato	nucleus	13.93	17.07
Solyc06g071680.2.1	Tomato	cytosol	12.13	15.71
Os07t0164300-01	Rice	plasma membrane	0.49	0.99

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009294
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR001876
InterPro:IPR037138	UniProt:K4BMC2	PFAM:PF00850	PRINTS:PR01270	ScanProsite:PS01358	PANTHER:PTHR10625
PANTHER:PTHR10625:SF180	SUPFAM:SSF52768	EnsemblPlantsGene:Solyc03g119730.2	EnsemblPlants:Solyc03g119730.2.1	UniParc:UPI00027667B3	InterPro:Ureohydrolase_dom_sf
InterPro:Znf_RanBP2	SEG:seg	:	:	:	:

Description

Histone deacetylase 15 [Source:Projected from Arabidopsis thaliana (AT3G18520) UniProtKB/Swiss-Prot;Acc:Q8GXJ1]

Coordinates

chr3:+:68283528..68292067

Molecular Weight (calculated)

66414.2 Da

IEP (calculated)

5.277

GRAVY (calculated)

-0.274

Length

610 amino acids

Sequence
(BLAST)

001: MILVQKCVTN SEGNEISESS KMSNLTGGKT ETNLPNQSGV ALCQDLNGRL DGVGSAVVCD YTCHNDGQSG EVSQLGTRDS DGISGLNADP AAITKSAKHE
101: SDMTLEDMYN ARYNFDEDDD DSDWEPSEKQ IEVLKWFCVN CSMINVEDVG NCEVCGEHRE SGILRHGFFA SPYLPVEDIN QDELPVTEDS EDSCKQSSLS
201: SSTAVGFDER MLLHTEVVLK SHPHPERPDR LRTIAASLAT AGIFPGKCHP IPAREITREE LQMIHSEENI EAVDNTKRMH ASYFTPDTYA NEYSACAARL
301: AAGLCADLAS AIYSGCVKNG FALVRPPGHH AGVKQAMGFC LHNNAAIAAS AAQAAGAKKV LIVDWDVHHG NGTQEIFERS KSVLYISLHR HEGGRFYPGT
401: GAADEVGSMG AEGYCVNIPW SRGGVSDNDY IFAFEQVVLP IALDFNPDFT IISAGFDAAR GDPLGCCDVT PAGYASMTQM LSALSGGKLL VILEGGYNLR
501: SISSSATAVI KVLLGESPVI DIDKAVPSKA GLRSVLDVLK IQMNFWPTLE ANFTKLHSQW GSYAFQDTRE QSKKRRRTGL PIWWRLGRKR LLYRVLSKQL
601: RAKSSCNFSC

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.