Factsheet for Bra001708.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82341	Canola	nucleus	92.81	87.16
KRH56687	Soybean	nucleus	55.4	55.4
Bra022329.1-P	Field mustard	nucleus	74.58	54.56
AT3G18520.2	Thale cress	cytosol	73.38	54.26
CDY52901	Canola	nucleus	52.76	47.21
KRH03799	Soybean	nucleus	58.03	44.57
Solyc03g119730.2.1	Tomato	nucleus	60.19	41.15
PGSC0003DMT400014582	Potato	nucleus	60.19	41.15
TraesCS5D01G076100.1	Wheat	nucleus	56.12	38.24
TraesCS5A01G065300.1	Wheat	nucleus	56.12	38.11
TraesCS5B01G072100.1	Wheat	nucleus	55.64	37.78
HORVU5Hr1G017550.9	Barley	nucleus	54.92	37.3
Os07t0164100-01	Rice	nucleus	55.16	36.92
VIT_17s0000g04120.t01	Wine grape	nucleus	60.67	36.3
Zm00001d018864_P002	Maize	nucleus	53.72	36.19
GSMUA_Achr8P20260_001	Banana	nucleus	54.92	36.18
OQU88485	Sorghum	nucleus	53.96	35.77
Bra029339.1-P	Field mustard	cytosol	29.74	25.78
Bra031628.1-P	Field mustard	cytosol	23.74	25.65
Bra012984.1-P	Field mustard	nucleus	33.81	21.79
Bra035942.1-P	Field mustard	peroxisome	32.85	21.08
Bra011444.1-P	Field mustard	golgi, vacuole	22.06	20.49
Bra019424.1-P	Field mustard	cytosol	16.55	16.2
Bra035858.1-P	Field mustard	nucleus	17.03	15.11
Bra018073.1-P	Field mustard	cytosol	13.91	14.54
Bra019516.1-P	Field mustard	cytosol	13.91	14.46
Bra040131.1-P	Field mustard	nucleus	17.03	14.14
Bra009877.1-P	Field mustard	cytosol	10.79	12.89
Bra038607.1-P	Field mustard	cytosol	17.03	12.46
Bra018072.1-P	Field mustard	cytosol	11.99	11.31
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra001708	EnsemblPlants:Bra001708.1	EnsemblPlants:Bra001708.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M4CBX8	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625
PANTHER:PTHR10625:SF180	SUPFAM:SSF52768	UniParc:UPI0002540479	InterPro:Ureohydrolase_dom_sf	SEG:seg	:

Description

AT3G18520 (E=4e-048) HDA15, ATHDA15 | HDA15; histone deacetylase

Coordinates

chrA03:+:17971398..17974761

Molecular Weight (calculated)

45729.4 Da

IEP (calculated)

10.059

GRAVY (calculated)

-0.308

Length

417 amino acids

Sequence
(BLAST)

001: MKKKSKDEAL KNWEKKKKPS SPKRVEKSLK KKRGRLYIIV KSQGVWDPQA WMFCKDNGLT QVEEKRGGSS PSTSSTAVGF DERMLLHSEF EVKELPHVER
101: PDRLRAIAAS LATAGVFPGR CFPIHAREIT KQELQMVHTS EHVDAVDITS QLHNRFSRAA RLAAGLCADL AKEIFSGRVK NAFALVRPPG HHAGIKDSMG
201: FCLHNNAAVA ALVAQALGAK KVLIVDWDVH HGNGTQEIFE KNKSVMYISL HRHEGGKLYP GTGAANELRC SGVGDRDYIY AFQHVVLPIA GFDAAKGDPL
301: GCCKVTPAGY SRMTQMLGDL CGGKMLVILE GGYNLRSISS SATAVIKVLL GENAENDLPI ATAPPSRACL RTVLDVMNIQ MKFWPSLAAS YSKLLSEIQS
401: GKQVGQRKER SLGERRS

Best Arabidopsis Sequence Match ( AT3G18520.2 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKSEKS DEKEGCSGSD MVEMGTKEAF VQLSLGSYDF KIKVILESIL PNPS

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.