Factsheet for Bra029339.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42846	Canola	nucleus	85.24	79.3
TraesCS1A01G317100.1	Wheat	mitochondrion	39.29	47.61
TraesCS1D01G317100.1	Wheat	mitochondrion	38.67	47.21
TraesCS1B01G329500.1	Wheat	cytosol	38.25	47.18
Bra012984.1-P	Field mustard	nucleus	61.33	45.6
Bra035942.1-P	Field mustard	peroxisome	59.88	44.31
HORVU1Hr1G066760.1	Barley	plastid	39.5	43.38
AT5G61070.1	Thale cress	cytosol	59.67	42.08
KRH56821	Soybean	nucleus	55.72	40.85
VIT_17s0000g07280.t01	Wine grape	cytosol	53.64	39.94
KRH03123	Soybean	cytosol	54.26	39.79
GSMUA_Achr4P03250_001	Banana	cytosol	52.6	38.1
Solyc03g115150.2.1	Tomato	cytosol	49.06	36.48
Zm00001d006780_P011	Maize	cytosol	50.73	34.66
EER97493	Sorghum	plastid	50.52	34.57
Os07t0602200-01	Rice	cytosol, nucleus, plastid	49.27	34.1
TraesCS2A01G177100.1	Wheat	cytosol	48.65	33.77
TraesCS2D01G185200.1	Wheat	cytosol, golgi	48.44	33.62
TraesCS2B01G204100.1	Wheat	cytosol	48.23	33.48
HORVU2Hr1G032540.2	Barley	plastid	49.27	32.33
Bra001708.1-P	Field mustard	nucleus	25.78	29.74
Bra031628.1-P	Field mustard	cytosol	21.0	26.17
Bra022329.1-P	Field mustard	nucleus	29.94	25.26
Bra011444.1-P	Field mustard	golgi, vacuole	21.62	23.16
Bra040131.1-P	Field mustard	nucleus	20.79	19.92
Bra019424.1-P	Field mustard	cytosol	17.05	19.25
Bra018073.1-P	Field mustard	cytosol	15.38	18.55
Bra019516.1-P	Field mustard	cytosol	15.38	18.45
Bra035858.1-P	Field mustard	nucleus	17.46	17.87
Bra009877.1-P	Field mustard	cytosol	12.27	16.91
Bra018072.1-P	Field mustard	cytosol	15.18	16.52
Bra038607.1-P	Field mustard	cytosol	18.09	15.26

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra029339	EnsemblPlants:Bra029339.1	EnsemblPlants:Bra029339.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M4EKM2	PFAM:PF00850	PRINTS:PR01270
PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	SUPFAM:SSF52768	UniParc:UPI00025457ED	InterPro:Ureohydrolase_dom_sf	SEG:seg

Description

AT5G61060 (E=1e-152) HDA05, HDA5, ATHDA5 | HDA05 (HISTONE DEACETYLASE 5); histone deacetylase

Coordinates

chrA02:-:25785420..25792715

Molecular Weight (calculated)

53693.4 Da

IEP (calculated)

8.085

GRAVY (calculated)

-0.464

Length

481 amino acids

Sequence
(BLAST)

001: MAGESRKRKV GLLYDERMCK HDTPDGEDHP ECPNRIKAIW AKLQLTGLAQ RCVVLGGSKA EDKHLQLVHT KEHVNLVKSL STKKKDSRRN KIASKLDSKY
101: LNGGSSEAAY LAAGSVVEVA EKVAEGELDC GFAIVRPPGH HAEADEAMGF CLFNNVAVAA SYLLNQRPDL GIKKILIVDW DVHHGNGTQK MFWKDPRVLV
201: FSVHRHDGGS FYPTGDDGDY DKVGEGAGEG FNINVPWEQG RRCGDEDYIA VWDHILIPVT KEFNPDLILL SAGFDAAIGD PRGRCFVTPY GYSVMLKKLM
301: EFAQGKIVMA LEGGYNLGGA LERLSSQFSP SVIKKQAESL RASLEVALEE KAALQTKVVE LQGEKLRLQD KYAAEAKEAA EKLTHVSSEL REAKIDLDFQ
401: RELFKKASEE KKLLEVRVLK LEAELQQEAS DKLRLRISRD RYAAEVKEAA EHLTKVRSEL RDVQIDLNLH RKLPKKAKKV K

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.