Factsheet for Bra009877.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88212	Canola	cytosol, golgi, nucleus, plastid	99.43	87.41
AT5G26040.2	Thale cress	endoplasmic reticulum	88.83	80.1
KRH05486	Soybean	cytosol	73.64	73.85
VIT_04s0008g00910.t01	Wine grape	plastid	74.5	72.42
Solyc08g065350.2.1	Tomato	cytosol	71.35	71.76
PGSC0003DMT400076991	Potato	cytosol	71.06	70.06
Os06t0571100-01	Rice	plastid	69.34	68.75
KXG29820	Sorghum	cytosol	67.62	67.05
TraesCS7B01G266000.1	Wheat	plastid	67.05	66.29
TraesCS7A01G362600.1	Wheat	plastid	67.34	66.2
TraesCS7D01G360500.1	Wheat	plastid	66.76	66.01
EER89968	Sorghum	plastid	65.62	65.43
Zm00001d046348_P003	Maize	plastid	65.33	59.84
GSMUA_Achr10P...	Banana	plastid	71.06	56.49
HORVU0Hr1G021730.1	Barley	cytosol	17.77	51.67
Bra035858.1-P	Field mustard	nucleus	25.79	19.15
Bra018073.1-P	Field mustard	cytosol	21.49	18.8
Bra019516.1-P	Field mustard	cytosol	20.34	17.71
Bra018072.1-P	Field mustard	cytosol	22.06	17.42
Bra040131.1-P	Field mustard	nucleus	24.36	16.93
Bra019424.1-P	Field mustard	cytosol	20.63	16.9
Bra038607.1-P	Field mustard	cytosol	25.5	15.61
Bra031628.1-P	Field mustard	cytosol	15.19	13.73
Bra029339.1-P	Field mustard	cytosol	16.91	12.27
Bra011444.1-P	Field mustard	golgi, vacuole	15.19	11.8
Bra001708.1-P	Field mustard	nucleus	12.89	10.79
Bra012984.1-P	Field mustard	nucleus	18.62	10.05
Bra035942.1-P	Field mustard	peroxisome	18.05	9.69
Bra022329.1-P	Field mustard	nucleus	15.19	9.3

Protein Annotations

EnsemblPlants:Bra009877.1	EnsemblPlants:Bra009877.1-P	EnsemblPlantsGene:Bra009877	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf
PANTHER:PTHR43497	PANTHER:PTHR43497:SF2	PFAM:PF00850	PRINTS:PR01270	SUPFAM:SSF52768	UniParc:UPI000253F3B8
UniProt:M4D079	MapMan:12.3.2.1.3	:	:	:	:

Description

AT5G26040 (E=4e-179) HDA2 | HDA2; histone deacetylase

Coordinates

chrA06:-:17834962..17837023

Molecular Weight (calculated)

39044.8 Da

IEP (calculated)

6.320

GRAVY (calculated)

-0.095

Length

349 amino acids

Sequence
(BLAST)

001: MSSFSMETHP EALRRERILS SKLYFNVPES KVSIIYSSAY DISFMGIEKL HPFDSTKWRR VCKFLVSDGF LEEKSIVEPL EASNSDLLVV HSLNYLNSLK
101: SSATVARITE VPPVAFFPNF LVQQKVLSPF RKQVGGTILA AKLAVERGWA INVGGGFHHC TAERGGGFCA FADISLCIHF AFLRLSISRV MIIDLDAHQG
201: NGHETDLGDD SRVYILDMYN PEIYPYDYSA RRFIDQKVEV MSGTSTDEYL RKLDKALEVA FRNFQPEMVV YNAGTDILDG DPLGLLKISP DGITSRDEKV
301: FRVAREREVP VVMLTSGGYM KSNARVIADS IENLSRQGLI KTQLDSAST

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.