Factsheet for Bra019516.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21800	Canola	cytosol	98.0	98.0
Bra018073.1-P	Field mustard	cytosol	92.02	92.48
Bra018072.1-P	Field mustard	cytosol	75.81	68.78
AT5G35600.1	Thale cress	cytosol	65.59	64.3
Bra035858.1-P	Field mustard	nucleus	60.35	51.49
Bra040131.1-P	Field mustard	nucleus	53.62	42.83
Bra019424.1-P	Field mustard	cytosol	45.39	42.72
Bra038607.1-P	Field mustard	cytosol	60.6	42.63
Bra009877.1-P	Field mustard	cytosol	17.71	20.34
Bra031628.1-P	Field mustard	cytosol	16.71	17.36
Bra029339.1-P	Field mustard	cytosol	18.45	15.38
Bra011444.1-P	Field mustard	golgi, vacuole	15.96	14.25
Bra001708.1-P	Field mustard	nucleus	14.46	13.91
Bra012984.1-P	Field mustard	nucleus	20.7	12.83
Bra022329.1-P	Field mustard	nucleus	17.21	12.11
Bra035942.1-P	Field mustard	peroxisome	19.45	12.0

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra019516	EnsemblPlants:Bra019516.1	EnsemblPlants:Bra019516.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M4DSM3
PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144
SUPFAM:SSF52768	UniParc:UPI000253F07D	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:

Description

AT5G35600 (E=2e-137) HDA7 | HDA7 (histone deacetylase7); histone deacetylase

Coordinates

chrA06:+:12644916..12650427

Molecular Weight (calculated)

44746.3 Da

IEP (calculated)

6.697

GRAVY (calculated)

-0.288

Length

401 amino acids

Sequence
(BLAST)

001: MASLASGPDG RKRRVSYYYE PYIGDGMESQ QIRTTHKLIR SYYLPRYMDI IRPRAAHHSD FTKFHSPEYI SFLRSVTPES ARLKTATDPS FKRFNLDAWD
101: SPVFSGLFPY CRLYAGGSIS AAEKLNRHEA DIAINWSGGM HRAKIDKACG FGYVNDVVLG ILELLKVFKR VLYIDIGYYH GEAVQEAFHK TDRVMTVSFH
201: KSGVDQRRGD ITDYGVGKGE YYSLNAPLKN GLDDASFATL FVPIIQKAME VYQPEAIVLL CGPDSLSGDA LGKFNLSVKG HGACLGYIRS FNVPLLLLGG
301: QGHTLGNVAR CWCYETGVAV GKELNDDCPM IADDDCFAPS YKLHIEPNPM ENLNTDGDIA KIKKTLLKQL SQVIHAPSVQ FQDTPPISQV TEAEEEDMET
401: R

Best Arabidopsis Sequence Match ( AT5G35600.1 )
(BLAST)

001: MASLADGGKR RVSYFYEPMI GDYYYGVNQP TKPQRIRVTH NLILSYNLHR HMEINHPDLA DASDFEKFHS LEYINFLKSV TPETVTDPHP SVSENLKRFN
101: VDVDWDGPVF HNLFDYCRAY AGGSISAAAK LNRQEADIAI NWAGGMHHVK KDKASGFGYV NDVVLAILEL LKSFKRVLYI EIGFPHGDEV EEAFKDTDRV
201: MTVSFHKVGD TGDISDYGEG KGQYYSLNAP LKDGLDDFSL RGLFIPVIHR AMEIYEPEVI VLQCGADSLA GDPFGTFNLS IKGHGDCLQY VRSFNVPLMI
301: LGGGGYTLPN VARCWCYETA IAVGEQLDND LPGNDYMKYF RPDYKLHILP TNRQNLNTRL DIITMRETLL AQLSLVMHAP SVPFQDTPSS SQATEAAEVD
401: MEKRNDPRI

Arabidopsis Description

HDA7Histone deacetylase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.