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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019516.1-P Field mustard cytosol 64.3 65.59
Bra018073.1-P Field mustard cytosol 63.81 65.41
CDY48157 Canola cytosol 63.57 65.16
CDY21800 Canola cytosol 63.57 64.84
CDY39567 Canola cytosol 63.81 64.29
CDY39570 Canola cytosol 63.08 63.08
CDY48160 Canola cytosol 62.1 62.1
Bra018072.1-P Field mustard cytosol 62.59 57.92
AT5G63110.1 Thale cress nucleus 62.84 54.56
AT3G44680.1 Thale cress cytosol 48.66 46.71
AT4G38130.1 Thale cress nucleus 54.52 44.51
CDY53952 Canola plastid 21.27 35.8
AT3G44490.1 Thale cress cytosol 13.45 34.81
AT3G44660.1 Thale cress cytoskeleton, cytosol, nucleus 11.98 34.51
AT1G08460.1 Thale cress cytosol 18.34 19.89
AT5G26040.2 Thale cress endoplasmic reticulum 18.34 19.38
AT4G33470.1 Thale cress plastid 15.89 15.37
AT5G61060.2 Thale cress cytosol 20.29 12.5
AT3G18520.2 Thale cress cytosol 17.11 12.41
AT5G61070.1 Thale cress cytosol 18.34 11.0
Protein Annotations
MapMan:12.3.2.1.1Gene3D:3.40.800.20EntrezGene:833525ProteinID:AED93985.1EMBL:AF510166ArrayExpress:AT5G35600
EnsemblPlantsGene:AT5G35600RefSeq:AT5G35600TAIR:AT5G35600RefSeq:AT5G35600-TAIR-GEnsemblPlants:AT5G35600.1TAIR:AT5G35600.1
Unigene:At.30589ProteinID:BAB09994.1EMBL:DQ447001EMBL:DQ653319GO:GO:0000003GO:GO:0003674
GO:GO:0003824GO:GO:0004407GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006325GO:GO:0006351GO:GO:0006355GO:GO:0006464
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009553GO:GO:0009790
GO:GO:0009791GO:GO:0009793GO:GO:0009845GO:GO:0009987GO:GO:0016043GO:GO:0016569
GO:GO:0016575GO:GO:0016787GO:GO:0019538GO:GO:0032041GO:GO:0046872GO:GO:0070932
Symbol:HDA7InterPro:His_deacetylseInterPro:His_deacetylse_1InterPro:His_deacetylse_domInterPro:His_deacetylse_dom_sfInterPro:IPR037138
RefSeq:NP_198410.1PFAM:PF00850PIRSF:PIRSF037913PO:PO:0007611PO:PO:0009046PRINTS:PR01270
PRINTS:PR01271PANTHER:PTHR10625PANTHER:PTHR10625:SF144UniProt:Q9FH09SUPFAM:SSF52768UniParc:UPI000009C9FC
InterPro:Ureohydrolase_dom_sf:::::
Description
HDA7Histone deacetylase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH09]
Coordinates
chr5:-:13770121..13771712
Molecular Weight (calculated)
46019.6 Da
IEP (calculated)
5.395
GRAVY (calculated)
-0.314
Length
409 amino acids
Sequence
(BLAST)
001: MASLADGGKR RVSYFYEPMI GDYYYGVNQP TKPQRIRVTH NLILSYNLHR HMEINHPDLA DASDFEKFHS LEYINFLKSV TPETVTDPHP SVSENLKRFN
101: VDVDWDGPVF HNLFDYCRAY AGGSISAAAK LNRQEADIAI NWAGGMHHVK KDKASGFGYV NDVVLAILEL LKSFKRVLYI EIGFPHGDEV EEAFKDTDRV
201: MTVSFHKVGD TGDISDYGEG KGQYYSLNAP LKDGLDDFSL RGLFIPVIHR AMEIYEPEVI VLQCGADSLA GDPFGTFNLS IKGHGDCLQY VRSFNVPLMI
301: LGGGGYTLPN VARCWCYETA IAVGEQLDND LPGNDYMKYF RPDYKLHILP TNRQNLNTRL DIITMRETLL AQLSLVMHAP SVPFQDTPSS SQATEAAEVD
401: MEKRNDPRI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.