Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48157 | Canola | cytosol | 88.42 | 89.97 |
| CDY21800 | Canola | cytosol | 88.67 | 89.78 |
| CDY39570 | Canola | cytosol | 78.33 | 77.75 |
| CDY48160 | Canola | cytosol | 77.59 | 77.02 |
| AT5G35600.1 | Thale cress | cytosol | 64.29 | 63.81 |
| CDY16736 | Canola | nucleus | 58.87 | 50.85 |
| CDY48127 | Canola | nucleus | 58.62 | 50.64 |
| CDX84385 | Canola | cytosol | 59.85 | 48.12 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 43.35 | 43.89 |
| CDX99186 | Canola | cytosol | 44.83 | 42.72 |
| CDY41500 | Canola | cytosol | 59.85 | 42.63 |
| CDY30008 | Canola | nucleus | 51.97 | 42.03 |
| CDY21119 | Canola | nucleus | 51.97 | 42.03 |
| CDY53952 | Canola | plastid | 22.91 | 38.27 |
| CDY06315 | Canola | cytosol | 17.0 | 17.88 |
| CDY22682 | Canola | cytosol | 17.0 | 17.88 |
| CDX88212 | Canola | cytosol, golgi, nucleus, plastid | 15.27 | 15.62 |
| CDX68980 | Canola | mitochondrion, plastid | 16.01 | 15.29 |
| CDX75356 | Canola | plastid | 15.76 | 15.06 |
| CDX82341 | Canola | nucleus | 16.01 | 14.64 |
| CDX80555 | Canola | cytosol, golgi, nucleus, plastid | 13.3 | 14.44 |
| CDY42846 | Canola | nucleus | 17.0 | 13.35 |
| CDY24487 | Canola | cytosol, nucleus, peroxisome | 17.0 | 12.68 |
| CDY23088 | Canola | nucleus | 19.7 | 12.36 |
| CDY02173 | Canola | nucleus | 19.7 | 12.29 |
| CDX92243 | Canola | nucleus | 17.0 | 12.11 |
| CDY16823 | Canola | peroxisome | 19.21 | 12.0 |
| CDX87200 | Canola | peroxisome | 19.21 | 11.91 |
| CDY47012 | Canola | cytosol | 11.08 | 10.51 |
| CDY52901 | Canola | nucleus | 9.85 | 8.58 |
Protein Annotations
| MapMan:12.3.2.1.1 | Gene3D:3.40.800.20 | GO:A0A078HNZ8 | UniProt:A0A078HNZ8 | EnsemblPlants:CDY39567 | ProteinID:CDY39567 |
| ProteinID:CDY39567.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 |
| GO:GO:0046872 | GO:GO:0070932 | EnsemblPlantsGene:GSBRNA2T00068116001 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | PFAM:PF00850 | PIRSF:PIRSF037913 | PRINTS:PR01270 | PRINTS:PR01271 |
| PANTHER:PTHR10625 | PANTHER:PTHR10625:SF144 | SUPFAM:SSF52768 | UniParc:UPI0004EEA76C | InterPro:Ureohydrolase_dom_sf | : |
Description
BnaCnng09360DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078HNZ8]
Coordinates
chrLK032452:-:98701..100722
Molecular Weight (calculated)
45319.9 Da
IEP (calculated)
6.445
GRAVY (calculated)
-0.319
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MENAANLAWV PDGRKRRVSY YYEPANGNGN GRESQQISTT HNLICSYYLP RYMDIIRPRP AQHSDFTKFH SPEYISFLRL VTPEYARSKT VTDPSLKRFN
101: LDAWDSPVFS GLFEYCRLYA GASISAAAKL NRHEADIAIN WSGGMHRAKR DEARGFGYVN DVVLGILELL KVFKRVLYID IGYCHGEAVQ EAFHKTDRVM
201: TVSFHKSGVD QRRGDITDYG VGKGEYYSLN APLKNGLDDA SFATLFVPII HKAMEVYQPE AIVLLCGPDS LSGDALGKFN LTVKGHGACL GYLRSFNVPL
301: MLLGGQGHTL GNVARCWCYE TGVAVGKDLN DDCPMIADDD CFAPAYKLHI EPNPMENLNT DGDIAKIKKT LLKQLSQVIH APSVQFQDTP PISQVTEEAE
401: EDMETR
101: LDAWDSPVFS GLFEYCRLYA GASISAAAKL NRHEADIAIN WSGGMHRAKR DEARGFGYVN DVVLGILELL KVFKRVLYID IGYCHGEAVQ EAFHKTDRVM
201: TVSFHKSGVD QRRGDITDYG VGKGEYYSLN APLKNGLDDA SFATLFVPII HKAMEVYQPE AIVLLCGPDS LSGDALGKFN LTVKGHGACL GYLRSFNVPL
301: MLLGGQGHTL GNVARCWCYE TGVAVGKDLN DDCPMIADDD CFAPAYKLHI EPNPMENLNT DGDIAKIKKT LLKQLSQVIH APSVQFQDTP PISQVTEEAE
401: EDMETR
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
Arabidopsis Description
HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.