CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67912
CDX74819
CDX76680
CDX89163
CDX93223
CDX93225
CDY07040
CDY07041
CDY11468
CDY20501
CDY24941
CDY53998
CDY60996
CDY68868

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	CDX74819	AT2G39940.1	12445118
AT5G63110.1	CDX93223	AT2G39940.1	12445118
AT5G63110.1	CDX93225	AT2G39940.1	12445118
AT5G63110.1	CDY07040	AT2G39940.1	12445118
AT5G63110.1	CDY07041	AT2G39940.1	12445118
AT5G63110.1	CDY20501	AT2G39940.1	12445118
AT5G63110.1	CDY24941	AT2G39940.1	12445118
AT5G63110.1	CDY60996	AT2G39940.1	12445118
AT5G63110.1	CDX67912	AT3G62980.1	12445118
AT5G63110.1	CDX76680	AT3G62980.1	12445118
AT5G63110.1	CDX89163	AT3G62980.1	12445118
AT5G63110.1	CDY11468	AT3G62980.1	12445118
AT5G63110.1	CDY53998	AT3G62980.1	12445118
AT5G63110.1	CDY68868	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035858.1-P	Field mustard	nucleus	99.57	99.57
CDY16736	Canola	nucleus	99.57	99.57
AT5G63110.1	Thale cress	nucleus	92.55	92.36
CDX84385	Canola	cytosol	93.4	86.93
KRH54336	Soybean	cytosol, nucleus, plastid	26.38	77.5
CDY41500	Canola	cytosol	93.62	77.19
GSMUA_Achr2P06520_001	Banana	cytosol	59.36	76.65
KRH03236	Soybean	nucleus	76.38	76.06
KRH57122	Soybean	nucleus	77.02	76.05
KRH63609	Soybean	cytosol	74.47	75.27
GSMUA_AchrUn_...	Banana	mitochondrion	55.74	72.38
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	67.66	69.43
PGSC0003DMT400046818	Potato	cytosol	66.6	68.64
Solyc03g112410.1.1	Tomato	cytosol	65.53	68.6
TraesCS6D01G168400.1	Wheat	cytosol	66.81	68.56
TraesCS6B01G210200.1	Wheat	cytosol	66.81	68.56
TraesCS6A01G181100.1	Wheat	cytosol	66.81	68.56
HORVU6Hr1G038010.6	Barley	cytosol	66.81	68.41
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	66.38	68.12
Zm00001d050139_P001	Maize	nucleus	67.66	64.77
KRH54335	Soybean	cytosol, nucleus, plastid	31.91	64.1
CDY48157	Canola	cytosol	51.06	60.15
CDY21800	Canola	cytosol	50.64	59.35
CDY39567	Canola	cytosol	50.64	58.62
CDY39570	Canola	cytosol	49.57	56.97
CDY48160	Canola	cytosol	48.94	56.23
CDY30008	Canola	nucleus	60.0	56.18
CDY21119	Canola	nucleus	60.0	56.18
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	46.81	54.86
CDX99186	Canola	cytosol	49.15	54.23
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	15.96	38.27
CDY53952	Canola	plastid	19.15	37.04
CDX88212	Canola	cytosol, golgi, nucleus, plastid	19.15	22.67
CDY22682	Canola	cytosol	18.3	22.28
CDY06315	Canola	cytosol	18.09	22.02
CDX80555	Canola	cytosol, golgi, nucleus, plastid	17.23	21.66
CDX68980	Canola	mitochondrion, plastid	16.6	18.35
CDX75356	Canola	plastid	16.17	17.88
CDX82341	Canola	nucleus	16.6	17.57
CDY24487	Canola	cytosol, nucleus, peroxisome	18.51	15.99
CDY42846	Canola	nucleus	17.23	15.67
CDX92243	Canola	nucleus	18.51	15.26
CDY02173	Canola	nucleus	20.43	14.75
CDY16823	Canola	peroxisome	20.21	14.62
CDX87200	Canola	peroxisome	20.21	14.5
CDY23088	Canola	nucleus	19.79	14.37
CDY47012	Canola	cytosol	12.13	13.32
CDY52901	Canola	nucleus	11.49	11.59

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:A0A078IDI1	UniProt:A0A078IDI1	EnsemblPlants:CDY48127	ProteinID:CDY48127
ProteinID:CDY48127.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:GSBRNA2T00088924001	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271
PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	UniParc:UPI0004EC96B7	InterPro:Ureohydrolase_dom_sf	SEG:seg

Description

BnaCnng15690DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078IDI1]

Coordinates

chrLK032755:-:57836..60226

Molecular Weight (calculated)

52664.7 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.500

Length

470 amino acids

Sequence
(BLAST)

001: METDESGVSL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIVHYNLHRR LEISRPNLAD ASDIGQFHSP DYVDFLRSVS PESMGDHSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFR RVLYVDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDIGAEK GKYYALNVPL NDGMDDESFR SMFRPLIQKV MDVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPG PMENLNTPKD MEKIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEEDL EERPKPRIWS GTANYESDSD DDEKSPPLVG FSGINDPPMD RDSTGEDDME DEPEVNPPSS

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.