Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07040 | Canola | cytosol | 95.29 | 93.25 |
| CDX93223 | Canola | cytosol | 90.4 | 90.86 |
| CDY07041 | Canola | cytosol | 88.89 | 89.19 |
| CDX74819 | Canola | cytosol | 80.64 | 79.83 |
| CDY24941 | Canola | cytosol | 79.12 | 79.66 |
| CDY20501 | Canola | cytosol | 80.3 | 79.24 |
| AT2G39940.1 | Thale cress | cytosol | 77.95 | 78.21 |
| CDY60996 | Canola | endoplasmic reticulum, golgi | 79.46 | 67.14 |
| KRH14993 | Soybean | cytosol | 61.95 | 64.79 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 65.15 | 64.72 |
| KRH73146 | Soybean | cytosol | 63.13 | 64.21 |
| KRH31107 | Soybean | cytosol | 63.64 | 64.07 |
| KRG97777 | Soybean | cytosol | 63.3 | 63.73 |
| Solyc05g052620.2.1 | Tomato | cytosol | 64.31 | 63.35 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 58.25 | 59.35 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 54.71 | 58.04 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 58.59 | 57.71 |
| Zm00001d042833_P001 | Maize | cytosol | 55.05 | 54.68 |
| Os05t0449500-01 | Rice | cytosol | 54.88 | 54.61 |
| Zm00001d012338_P001 | Maize | cytosol | 54.71 | 54.53 |
| Os01t0853400-01 | Rice | cytosol | 54.38 | 54.29 |
| EES18318 | Sorghum | cytosol | 54.71 | 54.26 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 15.66 | 54.07 |
| Zm00001d010082_P001 | Maize | cytosol | 54.21 | 53.76 |
| EES01769 | Sorghum | cytosol | 53.87 | 53.69 |
| HORVU3Hr1G085210.2 | Barley | cytosol | 53.54 | 53.54 |
| Zm00001d038273_P001 | Maize | cytosol | 53.87 | 53.42 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 53.37 | 53.37 |
| TraesCS3A01G367500.1 | Wheat | cytosol | 50.0 | 53.32 |
| TraesCS3D01G360400.2 | Wheat | cytosol | 53.37 | 53.28 |
| TraesCS1D01G278400.1 | Wheat | cytosol | 53.03 | 53.21 |
| HORVU1Hr1G073230.1 | Barley | cytosol | 52.86 | 53.13 |
| HORVU4Hr1G060950.3 | Barley | cytosol | 52.36 | 53.07 |
| TraesCS1B01G288100.1 | Wheat | cytosol | 52.69 | 52.87 |
| TraesCS1A01G279100.1 | Wheat | cytosol | 52.53 | 52.7 |
| TraesCS4A01G091200.1 | Wheat | cytosol | 51.85 | 52.56 |
| TraesCS4D01G214200.1 | Wheat | cytosol | 51.85 | 52.56 |
| Os03t0265500-01 | Rice | plasma membrane | 51.68 | 52.12 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 51.18 | 51.88 |
| EER95129 | Sorghum | cytosol | 49.83 | 50.08 |
| Zm00001d028543_P001 | Maize | cytosol | 49.83 | 50.08 |
| Zm00001d047848_P001 | Maize | cytosol | 49.49 | 49.75 |
| CDY68868 | Canola | cytosol | 28.45 | 31.3 |
| CDX71968 | Canola | cytosol | 30.13 | 30.97 |
| CDY26594 | Canola | cytosol | 30.13 | 30.97 |
| CDY34211 | Canola | cytosol | 29.97 | 30.96 |
| CDY16034 | Canola | cytosol | 30.13 | 30.92 |
| CDY28523 | Canola | cytosol | 29.8 | 30.78 |
| CDY53998 | Canola | cytosol | 29.8 | 30.31 |
| CDY31282 | Canola | cytosol | 29.63 | 29.98 |
| CDY53774 | Canola | cytosol | 29.46 | 29.86 |
| CDY21068 | Canola | cytosol | 29.63 | 29.83 |
| CDX90899 | Canola | cytosol | 28.96 | 29.35 |
| CDY11468 | Canola | cytosol | 29.29 | 29.24 |
| CDX76680 | Canola | cytosol | 29.12 | 29.08 |
| CDX97301 | Canola | cytosol | 4.38 | 28.26 |
| CDY03450 | Canola | cytosol | 28.45 | 27.7 |
| CDY34286 | Canola | cytosol | 28.28 | 27.59 |
| CDY21439 | Canola | cytosol | 27.95 | 27.48 |
| CDX67912 | Canola | endoplasmic reticulum, golgi | 29.8 | 27.44 |
| CDX83172 | Canola | cytosol, plastid | 27.78 | 27.18 |
| CDY21947 | Canola | plastid, vacuole | 28.62 | 27.16 |
| CDY22108 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 28.96 | 26.92 |
| CDX89163 | Canola | cytosol | 27.78 | 26.36 |
Protein Annotations
| EnsemblPlants:CDX93225 | EnsemblPlantsGene:GSBRNA2T00155181001 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR43944 | PANTHER:PTHR43944:SF6 | ProteinID:CDX93225 | ProteinID:CDX93225.1 | SEG:seg | SUPFAM:SSF52047 |
| UniParc:UPI0004EEA4E7 | MapMan:11.7.2.1.1 | : | : | : | : |
Description
BnaC04g46710D
Coordinates
chrLK031875:+:431692..433791
Molecular Weight (calculated)
67671.2 Da
IEP (calculated)
7.027
GRAVY (calculated)
-0.226
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPDNKKLR STPRNADDVI SLVMPYVTDP KDRESASLVN RTWLRADSET RYHVTMALCY ASAPDRLSAR FPNLRSLKLK GKPRAAMFNL IPDNWGGFVT
101: PWVNEIALSL RRIRSVHFRR MIVRDLDLDV LARARGDELE VLKLDKCLGF STDGLLSVVK HCRKIKTLLM DDSSFLEKDG KWLHELALHN TSLEVLNFYM
201: TEFTKLSPRD LETIARNCHR TLVSVKVGDV EVLELLGFFK AAVNLEEFCG GALDEDPETP DKYIKLTFPP KLSRLGLTYL GANEMPILFP FAAQLRKLDL
301: IYAFLETNDH CKLIQKCPNL EVLETRNVIG DKGLEVLAKC CKKLKRLRIE RGADEEEMDD ERRGYLVTQR GLTALAHGCK ELEYMAVYVT DITNECLRTI
401: GAYLKNLRDF RLVLLDQEER IVADLPLDKG VRSLLMGCEK LGRFAFYLRP GGLTDVGLGY IGQYSPNVRW MLLGYVGETD EGLVEFSREG CCPKLQKLEM
501: RGCCFSERAI AAAVMKLPSL RYLWVQGYRA SETGHDLRVM SRPYWNIELI QARRVPEADE MGEVSEVEHP AHILAYYSLA GQRTDCPPTV RVLD
101: PWVNEIALSL RRIRSVHFRR MIVRDLDLDV LARARGDELE VLKLDKCLGF STDGLLSVVK HCRKIKTLLM DDSSFLEKDG KWLHELALHN TSLEVLNFYM
201: TEFTKLSPRD LETIARNCHR TLVSVKVGDV EVLELLGFFK AAVNLEEFCG GALDEDPETP DKYIKLTFPP KLSRLGLTYL GANEMPILFP FAAQLRKLDL
301: IYAFLETNDH CKLIQKCPNL EVLETRNVIG DKGLEVLAKC CKKLKRLRIE RGADEEEMDD ERRGYLVTQR GLTALAHGCK ELEYMAVYVT DITNECLRTI
401: GAYLKNLRDF RLVLLDQEER IVADLPLDKG VRSLLMGCEK LGRFAFYLRP GGLTDVGLGY IGQYSPNVRW MLLGYVGETD EGLVEFSREG CCPKLQKLEM
501: RGCCFSERAI AAAVMKLPSL RYLWVQGYRA SETGHDLRVM SRPYWNIELI QARRVPEADE MGEVSEVEHP AHILAYYSLA GQRTDCPPTV RVLD
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.