CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67912
CDX74819
CDX76680
CDX89163
CDX93223
CDX93225
CDY07040
CDY07041
CDY11468
CDY20501
CDY24941
CDY53998
CDY60996
CDY68868

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	CDX74819	AT2G39940.1	12445118
AT5G63110.1	CDX93223	AT2G39940.1	12445118
AT5G63110.1	CDX93225	AT2G39940.1	12445118
AT5G63110.1	CDY07040	AT2G39940.1	12445118
AT5G63110.1	CDY07041	AT2G39940.1	12445118
AT5G63110.1	CDY20501	AT2G39940.1	12445118
AT5G63110.1	CDY24941	AT2G39940.1	12445118
AT5G63110.1	CDY60996	AT2G39940.1	12445118
AT5G63110.1	CDX67912	AT3G62980.1	12445118
AT5G63110.1	CDX76680	AT3G62980.1	12445118
AT5G63110.1	CDX89163	AT3G62980.1	12445118
AT5G63110.1	CDY11468	AT3G62980.1	12445118
AT5G63110.1	CDY53998	AT3G62980.1	12445118
AT5G63110.1	CDY68868	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038607.1-P	Field mustard	cytosol	98.95	98.95
CDX84385	Canola	cytosol	87.19	98.42
CDY48127	Canola	nucleus	77.19	93.62
CDY16736	Canola	nucleus	76.84	93.19
AT5G63110.1	Thale cress	nucleus	75.79	91.72
GSMUA_Achr2P06520_001	Banana	cytosol	49.12	76.92
KRH54336	Soybean	cytosol, nucleus, plastid	21.4	76.25
KRH57122	Soybean	nucleus	63.16	75.63
KRH03236	Soybean	nucleus	62.46	75.42
KRH63609	Soybean	cytosol	61.05	74.84
GSMUA_AchrUn_...	Banana	mitochondrion	45.96	72.38
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	56.49	70.31
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	55.79	69.43
TraesCS6B01G210200.1	Wheat	cytosol	55.61	69.21
TraesCS6A01G181100.1	Wheat	cytosol	55.61	69.21
TraesCS6D01G168400.1	Wheat	cytosol	55.61	69.21
PGSC0003DMT400046818	Potato	cytosol	55.26	69.08
HORVU6Hr1G038010.6	Barley	cytosol	55.44	68.85
Solyc03g112410.1.1	Tomato	cytosol	54.21	68.82
Zm00001d050139_P001	Maize	nucleus	56.14	65.17
KRH54335	Soybean	cytosol, nucleus, plastid	25.96	63.25
CDY48157	Canola	cytosol	42.63	60.9
CDY39567	Canola	cytosol	42.63	59.85
CDY21800	Canola	cytosol	42.11	59.85
CDY30008	Canola	nucleus	50.7	57.57
CDY21119	Canola	nucleus	50.7	57.57
CDY39570	Canola	cytosol	41.23	57.46
CDY48160	Canola	cytosol	40.35	56.23
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	38.25	54.36
CDX99186	Canola	cytosol	40.18	53.76
CDY53952	Canola	plastid	16.32	38.27
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	12.98	37.76
CDX88212	Canola	cytosol, golgi, nucleus, plastid	15.61	22.42
CDX80555	Canola	cytosol, golgi, nucleus, plastid	14.04	21.39
CDY22682	Canola	cytosol	14.39	21.24
CDY06315	Canola	cytosol	14.39	21.24
CDX68980	Canola	mitochondrion, plastid	13.51	18.12
CDX82341	Canola	nucleus	14.04	18.02
CDX75356	Canola	plastid	13.16	17.65
CDY42846	Canola	nucleus	14.74	16.25
CDY24487	Canola	cytosol, nucleus, peroxisome	15.44	16.18
CDX92243	Canola	nucleus	15.44	15.44
CDY16823	Canola	peroxisome	16.84	14.77
CDY02173	Canola	nucleus	16.84	14.75
CDX87200	Canola	peroxisome	16.67	14.5
CDY23088	Canola	nucleus	16.32	14.37
CDY47012	Canola	cytosol	10.35	13.79
CDY52901	Canola	nucleus	9.47	11.59

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:A0A078HSC9	UniProt:A0A078HSC9	EnsemblPlants:CDY41500	ProteinID:CDY41500
ProteinID:CDY41500.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932
EnsemblPlantsGene:GSBRNA2T00073112001	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
PFAM:PF00850	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768
UniParc:UPI0004EE2A7C	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

BnaA06g22530DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078HSC9]

Coordinates

chrLK032499:-:1443..4062

Molecular Weight (calculated)

64363.8 Da

IEP (calculated)

5.000

GRAVY (calculated)

-0.482

Length

570 amino acids

Sequence
(BLAST)

001: METDESGVSL ASGPDGRKRR VSYFYEPTIG NYYYGQGHPM KPHRIRMAHS LIVHYNLHRR LEISRPYLAD AADIGRFHSP EYVDFLRSVS PESVGDSSAR
101: NLRRFNVGED CPVFDGLFEF CRASAGGSIG AAVKLNRQDA DIAINWGGGL HHAKKSEASG FCYVNDIVLG ILELLKMFRR VLYIDIDVHH GDGVEEAFYT
201: TDRVMTVSFH KFGDFFPGTG HIRDVGAEKG KYYALNVPLN DGMDDESFRS LFRPLIQKVM EVYRPEAVVL QCGADSLSGD RLGCFNLSVK GHADCLRFLR
301: SYNVPLMVLG GGGYTIRNVA RCWCYETAVA VGVEPDNKLP YNEYFEYFGP DYTLHVEPGP MENLNTPKDM ERIRNTLLEQ LSGLIHAPSV PFQHTPPVNR
401: VLDEPEEDLE KRPKPRIWSG TANYESDSDD DEKPLGGFSG INGPTMDRDS TGEDEMEDDS AEPEKPFCFG LKSHYLRAAI AEDALNTSVK TGFSGSIVDL
501: FSEGRVMKEL QRSKCIGKIE EYVEEEREED VWKLRIQRER WRFGYGGNIE PGEPIFNDKL AICSNTWIWE

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.