CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68980	Canola	mitochondrion, plastid	96.24	96.24
Bra011444.1-P	Field mustard	golgi, vacuole	96.71	91.54
AT4G33470.1	Thale cress	plastid	86.82	87.23
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	48.47	77.74
Zm00001d042974_P001	Maize	mitochondrion	37.41	73.95
KRH59585	Soybean	plastid	66.12	66.9
VIT_04s0044g01510.t01	Wine grape	mitochondrion	68.47	66.59
EES01710	Sorghum	plastid	63.53	62.79
Os12t0182700-01	Rice	mitochondrion	63.76	61.17
TraesCS5A01G119300.2	Wheat	mitochondrion	63.06	60.36
TraesCS5D01G126600.1	Wheat	mitochondrion, plastid, vacuole	62.59	59.91
GSMUA_AchrUn_...	Banana	cytosol	62.12	59.59
HORVU5Hr1G037920.1	Barley	cytosol	63.29	59.51
TraesCS5B01G121300.1	Wheat	vacuole	63.29	59.38
CDX82341	Canola	nucleus	24.94	23.87
CDY22682	Canola	cytosol	20.24	22.28
CDY06315	Canola	cytosol	19.53	21.5
CDY24487	Canola	cytosol, nucleus, peroxisome	26.82	20.96
CDX92243	Canola	nucleus	27.29	20.35
CDY16823	Canola	peroxisome	26.12	17.08
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	16.0	16.96
CDY23088	Canola	nucleus	25.65	16.85
CDY42846	Canola	nucleus	20.47	16.83
CDX87200	Canola	peroxisome	25.88	16.79
CDX99186	Canola	cytosol	16.71	16.67
CDY02173	Canola	nucleus	25.18	16.44
CDY48127	Canola	nucleus	17.88	16.17
CDY16736	Canola	nucleus	17.88	16.17
CDY48157	Canola	cytosol	15.06	16.04
CDY21800	Canola	cytosol	15.06	15.96
CDY39567	Canola	cytosol	15.06	15.76
CDY21119	Canola	nucleus	18.12	15.34
CDY30008	Canola	nucleus	18.12	15.34
CDY47012	Canola	cytosol	15.29	15.19
CDX84385	Canola	cytosol	17.65	14.85
CDY48160	Canola	cytosol	14.12	14.67
CDY39570	Canola	cytosol	13.88	14.43
CDY52901	Canola	nucleus	15.76	14.38
CDX88212	Canola	cytosol, golgi, nucleus, plastid	12.71	13.6
CDY53952	Canola	plastid	7.53	13.17
CDY41500	Canola	cytosol	17.65	13.16
CDX80555	Canola	cytosol, golgi, nucleus, plastid	11.29	12.83

Protein Annotations

EnsemblPlants:CDX75356	EnsemblPlantsGene:GSBRNA2T00121236001	Gene3D:3.40.800.20	GO:A0A078CE06	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625	PANTHER:PTHR10625:SF175	PFAM:PF00850
PRINTS:PR01270	ProteinID:CDX75356	ProteinID:CDX75356.1	SUPFAM:SSF52768	UniParc:UPI0004EF1C36	MapMan:12.3.2.1.2

Description

BnaA01g03460D

Coordinates

chrLK031804:-:783185..785920

Molecular Weight (calculated)

45908.7 Da

IEP (calculated)

6.391

GRAVY (calculated)

-0.104

Length

425 amino acids

Sequence
(BLAST)

001: MTLTVRPLSV PQSGEVSGIR GFNLRNGLSL WRKHLVKHNK GAYICCSFST EKDPLLPSIQ QLTDARVIYS VSAALGHNKD SHPECSARVP AIVTALEKNE
101: LTPKFRGSEI LELANFKNAT IEDIANVHEK AYVLGLEKAM DQASDSGLIF IEGSGPTYAT STTFQDSLIA AGAGMALVDS VVTASRNSFD PPTGFALIRP
201: PGHHAVPKGP MGFCVFGNVA IAARHAQRAH GLTRVFIIDF DVHHGNGTND AFSEDPDIFF LSTHQDGSYP GTGKMSDIGK RKGEGTTLNL PLPGGSGDIA
301: MRTAFEEIIV PCVQRFKPDL ILVSAGYDAH VLDPLANLQF TTGTYYSLAK DIKQLAKEVC GGRCVFFLEG GYNLESLSAS VADSFRALLG EESLASEFDN
401: PAYLYDEPMR KVRDAIERAK SIHCL

Best Arabidopsis Sequence Match ( AT4G33470.1 )
(BLAST)

001: MSMALIVRPF FVPGSAGISG SRNICKKNQW RKYLLKPSGS SINCSFSTEK NPLLPSIQQL ADARLIYSVS AALGHNKESH PECSARVPAI VNALEMNELT
101: PKFRGSQILE LANFKTATVE DIANVHDKAY VFGLEKAMDE ASDSGLIFIE GSGPTYATST TFQDSLIAAG AGMALVDSVI AASRNSVDPP IGFALIRPPG
201: HHAVPKGPMG FCVFGNVAIA ARHAQRTHGL KRIFIIDFDV HHGNGTNDAF TEDPDIFFLS THQDGSYPGT GKISDIGKGK GEGTTLNLPL PGGSGDIAMR
301: TVFEEIIVPC AQRFKPDIIL VSAGYDAHVL DPLANLQFTT ATYYSLAKDI KRLAKEVCGG RCVFFLEGGY NLESLSSSVA DSFRALLGED SLASEFDNPA
401: YLYDEPMRKV RDAIQRAKSI HCL

Arabidopsis Description

HDA14Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A178V1U6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.