CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39567	Canola	cytosol	38.27	22.91
CDY21800	Canola	cytosol	37.04	22.44
CDY39570	Canola	cytosol	37.45	22.25
CDY48160	Canola	cytosol	36.21	21.52
CDY48157	Canola	cytosol	34.98	21.3
AT5G35600.1	Thale cress	cytosol	35.8	21.27
CDY48127	Canola	nucleus	37.04	19.15
CDY16736	Canola	nucleus	37.04	19.15
CDX84385	Canola	cytosol	38.27	18.42
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	30.04	18.2
CDX99186	Canola	cytosol	31.28	17.84
CDY30008	Canola	nucleus	34.16	16.53
CDY21119	Canola	nucleus	34.16	16.53
CDY41500	Canola	cytosol	38.27	16.32
CDY06315	Canola	cytosol	13.17	8.29
CDY22682	Canola	cytosol	13.17	8.29
CDX68980	Canola	mitochondrion, plastid	13.17	7.53
CDX75356	Canola	plastid	13.17	7.53
CDX88212	Canola	cytosol, golgi, nucleus, plastid	10.7	6.55
CDX82341	Canola	nucleus	11.93	6.53
CDY24487	Canola	cytosol, nucleus, peroxisome	13.58	6.07
CDX92243	Canola	nucleus	13.58	5.79
CDY42846	Canola	nucleus	11.52	5.42
CDX80555	Canola	cytosol, golgi, nucleus, plastid	8.23	5.35
CDY16823	Canola	peroxisome	12.76	4.77
CDX87200	Canola	peroxisome	12.76	4.73
CDY23088	Canola	nucleus	11.11	4.17
CDY02173	Canola	nucleus	10.7	3.99
CDY47012	Canola	cytosol	6.58	3.74
CDY52901	Canola	nucleus	5.76	3.0

Protein Annotations

EnsemblPlants:CDY53952	EnsemblPlantsGene:GSBRNA2T00011798001	Gene3D:3.40.800.20	GO:A0A078IVE0	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:His_deacetylse	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625
PANTHER:PTHR10625:SF144	ProteinID:CDY53952	ProteinID:CDY53952.1	SUPFAM:SSF52768	UniParc:UPI0004EE40B3	UniProt:A0A078IVE0
MapMan:35.1	:	:	:	:	:

Description

BnaC03g75230DBnaC03g75230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVE0]

Coordinates

chrLK033255:+:56108..58207

Molecular Weight (calculated)

27506.3 Da

IEP (calculated)

9.179

GRAVY (calculated)

-0.137

Length

243 amino acids

Sequence
(BLAST)

001: MLLKGEVMSS NNVKRINNLH VWPGGAHMRG VRVGALQSLG PRFTALQGTN PNPSHVRHSQ LYMFIRAFAP KNCFEPEVKS SKFGPRGRIR LIWEEAITME
101: MAVQEAFDNT GRMHHKEYGL DDASFSNLFV PVIHKAVEVY RPEALVLHSR VYSLTGDALA KFNLFIKGHT ACIVRSINAH LMVLGGEGHT LPNVARCWWS
201: LSHLFGNFDY VLFSCWLVVG EELDDKLPFN QYNGEFKHNK IVS

Best Arabidopsis Sequence Match ( AT5G35600.1 )
(BLAST)

001: MASLADGGKR RVSYFYEPMI GDYYYGVNQP TKPQRIRVTH NLILSYNLHR HMEINHPDLA DASDFEKFHS LEYINFLKSV TPETVTDPHP SVSENLKRFN
101: VDVDWDGPVF HNLFDYCRAY AGGSISAAAK LNRQEADIAI NWAGGMHHVK KDKASGFGYV NDVVLAILEL LKSFKRVLYI EIGFPHGDEV EEAFKDTDRV
201: MTVSFHKVGD TGDISDYGEG KGQYYSLNAP LKDGLDDFSL RGLFIPVIHR AMEIYEPEVI VLQCGADSLA GDPFGTFNLS IKGHGDCLQY VRSFNVPLMI
301: LGGGGYTLPN VARCWCYETA IAVGEQLDND LPGNDYMKYF RPDYKLHILP TNRQNLNTRL DIITMRETLL AQLSLVMHAP SVPFQDTPSS SQATEAAEVD
401: MEKRNDPRI

Arabidopsis Description

HDA7Histone deacetylase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.