Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- cytosol 1
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009877.1-P | Field mustard | cytosol | 87.41 | 99.43 |
| CDX80555 | Canola | cytosol, golgi, nucleus, plastid | 92.44 | 98.13 |
| AT5G26040.2 | Thale cress | endoplasmic reticulum | 84.63 | 86.82 |
| KRH05486 | Soybean | cytosol | 64.99 | 74.14 |
| VIT_04s0008g00910.t01 | Wine grape | plastid | 66.0 | 72.98 |
| Solyc08g065350.2.1 | Tomato | cytosol | 63.48 | 72.62 |
| PGSC0003DMT400076991 | Potato | cytosol | 63.22 | 70.9 |
| Os06t0571100-01 | Rice | plastid | 61.46 | 69.32 |
| KXG29820 | Sorghum | cytosol | 59.95 | 67.61 |
| TraesCS7B01G266000.1 | Wheat | plastid | 59.7 | 67.14 |
| TraesCS7A01G362600.1 | Wheat | plastid | 59.95 | 67.04 |
| TraesCS7D01G360500.1 | Wheat | plastid | 59.45 | 66.86 |
| EER89968 | Sorghum | plastid | 57.93 | 65.71 |
| Zm00001d046348_P003 | Maize | plastid | 57.93 | 60.37 |
| GSMUA_Achr10P... | Banana | plastid | 63.98 | 57.86 |
| HORVU0Hr1G021730.1 | Barley | cytosol | 15.62 | 51.67 |
| CDY16736 | Canola | nucleus | 22.67 | 19.15 |
| CDY48127 | Canola | nucleus | 22.67 | 19.15 |
| CDY48157 | Canola | cytosol | 18.64 | 18.55 |
| CDY21800 | Canola | cytosol | 18.39 | 18.2 |
| CDY48160 | Canola | cytosol | 18.64 | 18.09 |
| CDX84385 | Canola | cytosol | 22.42 | 17.62 |
| CDX99186 | Canola | cytosol | 18.39 | 17.14 |
| CDY39570 | Canola | cytosol | 17.63 | 17.11 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 17.13 | 16.96 |
| CDY21119 | Canola | nucleus | 21.16 | 16.73 |
| CDY30008 | Canola | nucleus | 21.16 | 16.73 |
| CDY41500 | Canola | cytosol | 22.42 | 15.61 |
| CDY39567 | Canola | cytosol | 15.62 | 15.27 |
| CDY06315 | Canola | cytosol | 13.35 | 13.73 |
| CDY22682 | Canola | cytosol | 13.35 | 13.73 |
| CDX68980 | Canola | mitochondrion, plastid | 13.85 | 12.94 |
| CDX75356 | Canola | plastid | 13.6 | 12.71 |
| CDY42846 | Canola | nucleus | 14.11 | 10.83 |
| CDX82341 | Canola | nucleus | 12.09 | 10.81 |
| CDY53952 | Canola | plastid | 6.55 | 10.7 |
| CDY24487 | Canola | cytosol, nucleus, peroxisome | 14.11 | 10.29 |
| CDY02173 | Canola | nucleus | 16.62 | 10.14 |
| CDY23088 | Canola | nucleus | 16.37 | 10.05 |
| CDY16823 | Canola | peroxisome | 16.12 | 9.85 |
| CDX92243 | Canola | nucleus | 14.11 | 9.82 |
| CDX87200 | Canola | peroxisome | 16.12 | 9.77 |
| CDY47012 | Canola | cytosol | 9.57 | 8.88 |
| CDY52901 | Canola | nucleus | 8.56 | 7.3 |
Protein Annotations
| EnsemblPlants:CDX88212 | EnsemblPlantsGene:GSBRNA2T00147678001 | Gene3D:3.40.800.20 | GO:A0A078DGY2 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | InterPro:Ureohydrolase_dom_sf | PANTHER:PTHR43497 | PANTHER:PTHR43497:SF2 | PFAM:PF00850 |
| PRINTS:PR01270 | ProteinID:CDX88212 | ProteinID:CDX88212.1 | SEG:seg | SUPFAM:SSF52768 | UniParc:UPI0004EF4618 |
| MapMan:12.3.2.1.3 | : | : | : | : | : |
Description
BnaA06g28030D
Coordinates
chrLK031854:-:1389564..1391901
Molecular Weight (calculated)
44626.5 Da
IEP (calculated)
6.720
GRAVY (calculated)
-0.061
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDVRVVSTW TDLTRDSAVY LLFTFSAIKV SQFIYRCFQS SEMSSFSMET HPEALRRERI LSSKLYFNVP ESKVSIIYSS AYDISFMGIE KLHPFDSTKW
101: RRVCKFLVSD GFLEEKSIVE PLEASNSDLL VVHSLNYLNS LKSSATVARI TEVPPVAFFP NFLVQQKVLS PFRKQVGGTI LAAKLAVERG WAINVGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLSIS RVMIIDLDAH QGNGHETDLG DDSRVYILDM YNPEIYPYDY SARRFIDQKV EVISGTSTDE YLRKLDKALE
301: VAFRNFQPEM VVYNAGTDIL DGDPLGLLKA SYTLKISPDG ITSRDEKVFR VAREREIPVV MLTSGGYMKS NARVIADSIE NLSRQGLIKT QLDSAST
101: RRVCKFLVSD GFLEEKSIVE PLEASNSDLL VVHSLNYLNS LKSSATVARI TEVPPVAFFP NFLVQQKVLS PFRKQVGGTI LAAKLAVERG WAINVGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLSIS RVMIIDLDAH QGNGHETDLG DDSRVYILDM YNPEIYPYDY SARRFIDQKV EVISGTSTDE YLRKLDKALE
301: VAFRNFQPEM VVYNAGTDIL DGDPLGLLKA SYTLKISPDG ITSRDEKVFR VAREREIPVV MLTSGGYMKS NARVIADSIE NLSRQGLIKT QLDSAST
001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE
Arabidopsis Description
HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.