CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89968	Sorghum	plastid	75.0	75.43
KRH05486	Soybean	cytosol	69.6	70.4
Solyc08g065350.2.1	Tomato	cytosol	68.75	69.74
VIT_04s0008g00910.t01	Wine grape	plastid	70.74	69.36
PGSC0003DMT400076991	Potato	cytosol	69.03	68.64
Bra009877.1-P	Field mustard	cytosol	67.05	67.62
AT5G26040.2	Thale cress	endoplasmic reticulum	69.32	63.05
CDX88212	Canola	cytosol, golgi, nucleus, plastid	67.61	59.95
CDX80555	Canola	cytosol, golgi, nucleus, plastid	62.5	58.82
GSMUA_Achr10P...	Banana	plastid	73.3	58.77
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	26.42	20.31
EES10729	Sorghum	cytosol	24.15	19.77
OQU83122	Sorghum	cytosol	19.32	18.99
KXG20269	Sorghum	nucleus	26.42	17.95
EES04741	Sorghum	nucleus	25.57	17.41
OQU87074	Sorghum	cytosol	23.58	16.87
EES19606	Sorghum	cytosol	16.19	14.62
EES01710	Sorghum	plastid	17.05	13.95
EER97493	Sorghum	plastid	20.45	10.24
OQU88485	Sorghum	nucleus	16.76	9.38

Protein Annotations

EnsemblPlants:KXG29820	EnsemblPlantsGene:SORBI_3004G094500	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR43497
PANTHER:PTHR43497:SF2	PFAM:PF00850	PRINTS:PR01270	ProteinID:KXG29820	ProteinID:KXG29820.1	SEG:seg
SUPFAM:SSF52768	UniParc:UPI0003C69602	UniProt:A0A194YPR3	MapMan:12.3.2.1.3	:	:

Description

hypothetical protein

Coordinates

chr4:+:8149964..8155289

Molecular Weight (calculated)

38765.4 Da

IEP (calculated)

5.605

GRAVY (calculated)

-0.092

Length

352 amino acids

Sequence
(BLAST)

001: MASTSGDTSA AEALRRGRIL SSRLYLDGVP SSKAPVVYSP AYDIEFNGIE KQHPFDSAKW GRVRNFLVDA GLLQNDRIIE PLEASEDDLL VVHSESYLNS
101: LKSSAKVARI VEVPAVALLP NLLVQQKLLY PFRKQVGGSI LSAKLALERG CAINIGGGFH HCSAEEGGGF CAYADISLCI HFAFVRLNIS RVMIIDLDAH
201: QGNGHEKDFG SDERVYTLDM YNSGIYPFDH VAKKYIDQKI ELHSGTKTED YLEILDKALK VAESRFQPQL ILYNAGTDIL DGDPLGSLKV SPDGVITRDE
301: KVFRFAKDQS IPLLMLTSGG YMKSSARVIA DSIINLSNKN LIDIDTHCIE IE

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.