CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042974_P001	Maize	mitochondrion	47.67	95.35
Os12t0182700-01	Rice	mitochondrion	81.63	79.23
TraesCS5A01G119300.2	Wheat	mitochondrion	81.63	79.05
TraesCS5D01G126600.1	Wheat	mitochondrion, plastid, vacuole	80.47	77.93
TraesCS5B01G121300.1	Wheat	vacuole	81.16	77.04
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	47.44	76.98
HORVU5Hr1G037920.1	Barley	cytosol	80.47	76.55
GSMUA_AchrUn_...	Banana	cytosol	68.6	66.59
VIT_04s0044g01510.t01	Wine grape	mitochondrion	66.28	65.22
KRH59585	Soybean	plastid	63.49	65.0
AT4G33470.1	Thale cress	plastid	63.49	64.54
CDX68980	Canola	mitochondrion, plastid	63.02	63.76
CDX75356	Canola	plastid	62.79	63.53
Bra011444.1-P	Field mustard	golgi, vacuole	63.26	60.58
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	25.35	32.34
EES19606	Sorghum	cytosol	20.7	22.82
OQU88485	Sorghum	nucleus	27.91	19.08
EER97493	Sorghum	plastid	28.6	17.5
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	18.37	17.25
KXG29820	Sorghum	cytosol	13.95	17.05
OQU83122	Sorghum	cytosol	13.95	16.76
EES10729	Sorghum	cytosol	16.74	16.74
EES04741	Sorghum	nucleus	17.91	14.89
KXG20269	Sorghum	nucleus	17.91	14.86
EER89968	Sorghum	plastid	12.09	14.86
OQU87074	Sorghum	cytosol	15.35	13.41

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EntrezGene:8085432	UniProt:C5XP11	ncoils:Coil	EnsemblPlants:EES01710
ProteinID:EES01710	ProteinID:EES01710.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0042903	GO:GO:0043014	GO:GO:0043621	GO:GO:0048487	GO:GO:0051721	GO:GO:0070932
GO:GO:0090042	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850
PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF175	EnsemblPlantsGene:SORBI_3003G345900	SUPFAM:SSF52768	UniParc:UPI0001A845FA
InterPro:Ureohydrolase_dom_sf	RefSeq:XP_002456590.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:66687895..66692691

Molecular Weight (calculated)

46700.4 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.172

Length

430 amino acids

Sequence
(BLAST)

001: MSPLFRHCCA FGSHHPHPLI WRSIFQTSGR EQKQIRSWRA QCSANQDQAS IEKSNAPKNL AIPDDSLLDA RILYCTSPAL GHNKEAHPES NKRVPAIVDA
101: LEKLELSPKH RGSQVLEIQN FNPASLDDVA RVHSRSYITG LEKAMRRASD EGLIFIEGTG PTYATETTFQ ESLLSAGAGI TLVDSVVAAS KLGPNPPLGF
201: ALVRPPGHHA VPQGPMGFCV FGNIAVAARY AQHQHGLKRV MIIDFDVHHG NGTSDAFYVD PDIFFLSTHQ LGSYPGTGKI NEVGQGDGEG TTLNLPLPGG
301: AGDYAMRYAF DEVIAPSAHR FKPDIILVSA GYDAHVLDPL AGLQFTTGTF YMLAFSIKQL AKELCGGRCV FFLEGGYNLQ SLSSSVADTF RAFLDETSLA
401: AQFDDPAILF EEPTRKIKDA IEKAKGIHSL

Best Arabidopsis Sequence Match ( AT4G33470.1 )
(BLAST)

001: MSMALIVRPF FVPGSAGISG SRNICKKNQW RKYLLKPSGS SINCSFSTEK NPLLPSIQQL ADARLIYSVS AALGHNKESH PECSARVPAI VNALEMNELT
101: PKFRGSQILE LANFKTATVE DIANVHDKAY VFGLEKAMDE ASDSGLIFIE GSGPTYATST TFQDSLIAAG AGMALVDSVI AASRNSVDPP IGFALIRPPG
201: HHAVPKGPMG FCVFGNVAIA ARHAQRTHGL KRIFIIDFDV HHGNGTNDAF TEDPDIFFLS THQDGSYPGT GKISDIGKGK GEGTTLNLPL PGGSGDIAMR
301: TVFEEIIVPC AQRFKPDIIL VSAGYDAHVL DPLANLQFTT ATYYSLAKDI KRLAKEVCGG RCVFFLEGGY NLESLSSSVA DSFRALLGED SLASEFDNPA
401: YLYDEPMRKV RDAIQRAKSI HCL

Arabidopsis Description

HDA14Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A178V1U6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.