CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU83122	Sorghum	cytosol	33.13	45.53
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	41.46	44.54
EES04741	Sorghum	nucleus	44.72	42.55
KXG20269	Sorghum	nucleus	44.51	42.28
EES10729	Sorghum	cytosol	36.38	41.63
EER89968	Sorghum	plastid	17.07	24.0
KXG29820	Sorghum	cytosol	16.87	23.58
EES19606	Sorghum	cytosol	17.48	22.05
EES01710	Sorghum	plastid	13.41	15.35
EER97493	Sorghum	plastid	18.9	13.23
OQU88485	Sorghum	nucleus	15.85	12.4

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	EntrezGene:8078655	UniProt:A0A1W0VY79	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse
InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlants:OQU87074	ProteinID:OQU87074
ProteinID:OQU87074.1	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625
PANTHER:PTHR10625:SF126	EnsemblPlantsGene:SORBI_3003G200400	SUPFAM:SSF52768	UniParc:UPI0001A84E32	InterPro:Ureohydrolase_dom_sf	RefSeq:XP_002458054.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:52804743..52806221

Molecular Weight (calculated)

54973.0 Da

IEP (calculated)

6.642

GRAVY (calculated)

-0.466

Length

492 amino acids

Sequence
(BLAST)

001: MDTSGNSLPS PSCPDGKKRE VCYYYDAGIA SVDYGEDHSM VPRRVDMAHA LVRSYGLLHD MRRLRTRPAT VTEITGDFHE PDYVRLLQNL TPESFYAGGA
101: TMSAAKAHNI GVLKEGETFY DNPPIAGLWD YCQRYAGGSL AAARALGEGK ADIAINWSGG MHHACKAAAS GFCFVNDIVL AIKDLLHHFR RVLYVDIDVH
201: HGDGVETAFL DSNRVMTVSF HQRTKNFFPE ERGHVNHVGE GAGLYRALNV PFMEGVGDEG YCEMFKAIMK RVVDVFQPEA IVMQCGSDSL SGDRLGQLNL
301: SIAGHAQCVS YMRSFNLPLL LLGGGGYTVN HVAACWCYET AVAIGKEIDD NIPVHCYDTY YSGQGYKLHY PVDKQLKNEN KRSYLERTMT AVLENLSHLE
401: AAPSVQFQDP PGPGGSGSTN TEPLFYEQAP REDDDPMERL HRLCGERDER CFFRELGKKR QVAKDRENGG HHQTSRPEPV KKYRHEKFHF KC

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.