CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G291000.1	Wheat	cytosol	96.28	96.28
TraesCS2A01G293200.1	Wheat	cytosol	96.28	96.28
TraesCS2B01G309700.1	Wheat	cytosol	95.81	95.81
Zm00001d003813_P001	Maize	cytosol	95.12	91.5
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	51.16	88.71
VIT_15s0021g00610.t01	Wine grape	cytosol	86.28	86.28
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	86.05	86.05
KRH25183	Soybean	cytosol	85.58	85.78
KRH30495	Soybean	cytosol	85.58	85.78
PGSC0003DMT400068240	Potato	cytosol	79.07	85.64
Solyc11g067020.1.1	Tomato	cytosol	84.88	84.88
AT3G44680.1	Thale cress	cytosol	81.16	81.92
Bra019424.1-P	Field mustard	cytosol	79.77	80.52
CDX99186	Canola	cytosol	79.77	80.52
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	74.88	80.3
GSMUA_Achr6P17260_001	Banana	plastid	88.14	78.96
AT3G44490.1	Thale cress	cytosol	27.67	75.32
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	24.42	73.94
HORVU2Hr1G072570.5	Barley	plastid	47.91	73.31
Os04t0409600-01	Rice	cytosol	31.4	71.81
KXG20269	Sorghum	nucleus	60.0	49.81
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	53.02	49.78
EES04741	Sorghum	nucleus	59.53	49.52
OQU87074	Sorghum	cytosol	41.63	36.38
OQU83122	Sorghum	cytosol	28.84	34.64
KXG29820	Sorghum	cytosol	19.77	24.15
EER89968	Sorghum	plastid	18.14	22.29
EES19606	Sorghum	cytosol	19.53	21.54
EES01710	Sorghum	plastid	16.74	16.74
EER97493	Sorghum	plastid	21.16	12.94
OQU88485	Sorghum	nucleus	18.6	12.72

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	EntrezGene:8075265	UniProt:C5YFT2	EnsemblPlants:EES10729
ProteinID:EES10729	ProteinID:EES10729.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271
PANTHER:PTHR10625	PANTHER:PTHR10625:SF171	EnsemblPlantsGene:SORBI_3006G067600	SUPFAM:SSF52768	UniParc:UPI0001A86EAA	InterPro:Ureohydrolase_dom_sf
RefSeq:XP_002446401.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:42785485..42802516

Molecular Weight (calculated)

49220.1 Da

IEP (calculated)

4.908

GRAVY (calculated)

-0.405

Length

430 amino acids

Sequence
(BLAST)

001: MLEKDRISYF YDGDVGNVYF GPNHPMKPHR LCMTHHLVLS YGLHKKMEIY RPHKAYPIEL AQFHSADYVE FLHRITPDTQ HLYASELTRY NLGEDCPVFD
101: NLFEFCQIYT GGTLDAARRL NHKTCDIAIN WAGGLHHAKK CEASGFCYIN DLVLGILELL KYHARVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKYGDL
201: FFPGTGDIKD IGEREGKYYA INIPLKDGID DSSFTRLFKT IIAKVIETYL PGAIVLQCGA DSLARDRLGC FNLSIEGHAE CVKFVKKFNI PLLVTGGGGY
301: TKENVARCWA VETGVLLDTE LPNEIPNNEY IEYFAPDYTL KVPNLNMDNL NSKTYLSSIK VQVMESLRSI QHAPGVQMQE VPPDFYIPDF DEDELDPDER
401: VDQHTQDKQI HRDDEYYEGD NDNDHDDGAR

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.