CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006780_P011	Maize	cytosol	91.32	91.19
Os07t0602200-01	Rice	cytosol, nucleus, plastid	77.52	78.42
TraesCS1B01G329500.1	Wheat	cytosol	43.1	77.69
TraesCS1A01G317100.1	Wheat	mitochondrion	43.53	77.08
TraesCS1D01G317100.1	Wheat	mitochondrion	42.67	76.14
TraesCS2A01G177100.1	Wheat	cytosol	74.4	75.47
TraesCS2D01G185200.1	Wheat	cytosol, golgi	73.68	74.75
TraesCS2B01G204100.1	Wheat	cytosol	73.54	74.6
HORVU2Hr1G032540.2	Barley	plastid	74.4	71.35
HORVU1Hr1G066760.1	Barley	plastid	44.1	70.78
GSMUA_Achr4P03250_001	Banana	cytosol	57.61	60.99
VIT_17s0000g07280.t01	Wine grape	cytosol	54.91	59.75
KRH56821	Soybean	nucleus	54.62	58.54
CDY23088	Canola	nucleus	52.2	56.72
Bra012984.1-P	Field mustard	nucleus	52.2	56.72
KRH03123	Soybean	cytosol	52.77	56.55
Bra035942.1-P	Field mustard	peroxisome	51.92	56.15
CDY02173	Canola	nucleus	51.92	56.07
CDY16823	Canola	peroxisome	51.78	56.0
Solyc03g115150.2.1	Tomato	cytosol	50.78	55.18
CDX87200	Canola	peroxisome	51.35	55.11
AT5G61060.2	Thale cress	cytosol	51.78	54.82
Bra029339.1-P	Field mustard	cytosol	34.57	50.52
CDY42846	Canola	nucleus	33.71	45.84
CDY47012	Canola	cytosol	25.18	41.36
AT5G61070.1	Thale cress	cytosol	37.41	38.56
EES01710	Sorghum	plastid	17.5	28.6
EES19606	Sorghum	cytosol	14.65	26.41
OQU88485	Sorghum	nucleus	23.47	26.23
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	14.94	22.93
EER89968	Sorghum	plastid	10.67	21.43
KXG20269	Sorghum	nucleus	15.79	21.43
EES10729	Sorghum	cytosol	12.94	21.16
EES04741	Sorghum	nucleus	15.22	20.7
KXG29820	Sorghum	cytosol	10.24	20.45
OQU83122	Sorghum	cytosol	9.96	19.55
OQU87074	Sorghum	cytosol	13.23	18.9

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EntrezGene:8060653	UniProt:C5XDU1	EnsemblPlants:EER97493	ProteinID:EER97493
ProteinID:EER97493.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932
InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PRINTS:PR01270
PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	EnsemblPlantsGene:SORBI_3002G366400	SUPFAM:SSF52768	unigene:Sbi.11662	UniParc:UPI0001A83847
InterPro:Ureohydrolase_dom_sf	RefSeq:XP_002460972.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:72626015..72633974

Molecular Weight (calculated)

76731.3 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.176

Length

703 amino acids

Sequence
(BLAST)

001: MSAPAPAPAP PMAAPRVGLL YDDRMRAHAT PDGEEHPENP ERLRAIWRKL NAEGVAPRCV ALKAKEAEDK YIASVHSKSH IKLMKEISSK KYDATRNKIA
101: RKFNSIYFNK GSSESAVLAA GSVIEVAEKV AAGELSSAIA LVRPPGHHAE HDEAMGFCLF NNVAVAANYL LNERPDLGIK KILIVDWDVH HGNGTQKMFY
201: NDPRVLFFSV HRFDYGSFYP AEGDASHCFI GEEGGKGYNI NVPWEHGKCG DADYIAAWDH VLLPVTKVFD PDIILVSAGF DAALGDPLGG CCITPNGYAL
301: LLTKLLGFAQ GRIVMALEGG YNLRSIANSV CACAKVLLGD KFTFNAPEMQ PFESTWSVIQ AVRNELKTCW PVLSSKLPEN VSLRIRPSPS EVNASSDSES
401: DSEDVAELLP TVASVNVIEV AGDAISEHLS KMKLDDDNLS VKTTSSCSAA EQHLVDSVKV QNNASVVLTK KISDLSLAWR SDLSRTDVWY ASFGSNMWRP
501: RFLCYVQGGK AEGMSIACYG SRDTSSPKGT MWKTVPHRLL FGRSSTPCWG TGGVAFLNPE INYNEKSYVC MYKITLEQFN DILFQENRLV LKDGKDGNVV
601: YPDSPLIGSS EIKFISTNKA IHLEPIKDSW YSNVLYLGNE GELPILTMTC PASDIERFKS GELPLAPPSE TYAATLIRGL VEGKQLDADG AANYINACAA
701: KGL

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.