CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56821	Soybean	nucleus	91.46	91.46
VIT_17s0000g07280.t01	Wine grape	cytosol	66.01	67.03
Bra012984.1-P	Field mustard	nucleus	61.59	62.44
CDY23088	Canola	nucleus	61.59	62.44
CDY02173	Canola	nucleus	61.13	61.6
AT5G61060.2	Thale cress	cytosol	61.28	60.54
CDY16823	Canola	peroxisome	59.3	59.85
Bra035942.1-P	Field mustard	peroxisome	59.3	59.85
CDX87200	Canola	peroxisome	59.3	59.39
TraesCS1A01G317100.1	Wheat	mitochondrion	34.45	56.93
Solyc03g115150.2.1	Tomato	cytosol	55.95	56.72
GSMUA_Achr4P03250_001	Banana	cytosol	57.16	56.48
TraesCS1B01G329500.1	Wheat	cytosol	33.54	56.41
TraesCS1D01G317100.1	Wheat	mitochondrion	33.23	55.33
Bra029339.1-P	Field mustard	cytosol	39.79	54.26
Os07t0602200-01	Rice	cytosol, nucleus, plastid	55.95	52.81
EER97493	Sorghum	plastid	56.55	52.77
Zm00001d006780_P011	Maize	cytosol	55.79	51.99
HORVU1Hr1G066760.1	Barley	plastid	34.15	51.14
TraesCS2A01G177100.1	Wheat	cytosol	53.96	51.08
TraesCS2B01G204100.1	Wheat	cytosol	53.66	50.79
TraesCS2D01G185200.1	Wheat	cytosol, golgi	53.51	50.65
CDY42846	Canola	nucleus	39.63	50.29
HORVU2Hr1G032540.2	Barley	plastid	54.42	48.7
CDY47012	Canola	cytosol	29.42	45.09
AT5G61070.1	Thale cress	cytosol	43.6	41.94
KRH56687	Soybean	nucleus	23.02	36.21
KRH59585	Soybean	plastid	18.6	29.05
KRH26679	Soybean	cytosol	16.31	28.08
KRH03799	Soybean	nucleus	23.17	27.99
KRH54336	Soybean	cytosol, nucleus, plastid	5.49	22.5
KRH27562	Soybean	nucleus	16.31	21.53
KRH25183	Soybean	cytosol	13.87	21.21
KRH63609	Soybean	cytosol	14.94	21.08
KRH30495	Soybean	cytosol	13.72	20.98
KRH77972	Soybean	nucleus	15.85	20.93
KRH03236	Soybean	nucleus	14.79	20.55
KRH60609	Soybean	nucleus	15.55	20.52
KRH57122	Soybean	nucleus	14.79	20.38
KRH51318	Soybean	nucleus	15.24	20.12
KRH05486	Soybean	cytosol	10.67	20.11
KRH54335	Soybean	cytosol, nucleus, plastid	6.55	18.38
KRH63610	Soybean	cytosol	5.34	17.77
KRH16462	Soybean	nucleus	1.37	11.54

Protein Annotations

EntrezGene:100807829	MapMan:12.3.2.1.2	Gene3D:3.10.490.10	Gene3D:3.40.800.20	UniProt:A0A0R0FIH2	EMBL:ACUP02010335
EnsemblPlantsGene:GLYMA_17G078000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932
InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlants:KRH03123	ProteinID:KRH03123
ProteinID:KRH03123.1	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	SUPFAM:SSF52768
UniParc:UPI0006EDADDE	InterPro:Ureohydrolase_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:6088051..6095330

Molecular Weight (calculated)

73000.8 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.149

Length

656 amino acids

Sequence
(BLAST)

001: MERENENSVN AQRRVGLLYD ETMCKHHTPD DEDHPENPNR IRAIWNRLQS AGVLQRCVIL EAKEAEDKHL LLVHSINHVN LIKNISSKQF NSRRHKIASK
101: LGSIYFNEGS SEAAYLAAGS AVEVVKRVAS RELDSAVAIV RPPGHHAEQQ EAMGFCLFNN VAVAARYLLD ERPELGVKKI LIVDWDVHHG NGTQKMFWND
201: SRVLFFSVHR HEFGSFYPAN DDGFYTMIGE GAGAGYNINV PWENGRCGDA DYFAVWDHIL LPVAKEFNPD IIIVSAGFDA AVGDPLGGCL VTPFGYSVLL
301: EKLMNFAEGR IVLILEGGYN LDSISKSMHA CLEVLLADQP VIGSAEAYPF ESTWRVIQAV RQVLSPFWPT LARELPHKLI SPMAPPPYTL ISSSDTEAED
401: DKGALSSENL VELLEDVIKP LSELKVDADK ETDVSSTWRS ELSNVYIWYA SYGSNMWKAI LNCHLAGGQV EGMKKDCSGS VNRTLPKAIL WKTFPCHIFF
501: GCDSSHSWGV GGVAFLNPEK NFQHNTYMCL YKISLEQFND ILFQENALSL DAGSPLFDIT TVNAISNKEF NSLEVVKGAW YGNVVYLGKE QDIPVVTMTC
601: SLLDIGNFKS GKLPLRAPNK AYANTLIKGL VDGEQLSEVE AIAYIEGYIW WCHGGR

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.