Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029339.1-P | Field mustard | cytosol | 42.08 | 59.67 |
| CDY42846 | Canola | nucleus | 42.08 | 55.51 |
| AT5G61060.2 | Thale cress | cytosol | 53.37 | 54.82 |
| TraesCS1A01G317100.1 | Wheat | mitochondrion | 31.52 | 54.16 |
| TraesCS1B01G329500.1 | Wheat | cytosol | 30.5 | 53.33 |
| TraesCS1D01G317100.1 | Wheat | mitochondrion | 30.79 | 53.3 |
| Bra035942.1-P | Field mustard | peroxisome | 48.97 | 51.38 |
| CDY16823 | Canola | peroxisome | 48.68 | 51.08 |
| CDX87200 | Canola | peroxisome | 48.68 | 50.69 |
| HORVU1Hr1G066760.1 | Barley | plastid | 31.52 | 49.09 |
| CDY47012 | Canola | cytosol | 30.21 | 48.13 |
| VIT_17s0000g07280.t01 | Wine grape | cytosol | 44.13 | 46.59 |
| KRH56821 | Soybean | nucleus | 42.67 | 44.36 |
| KRH03123 | Soybean | cytosol | 41.94 | 43.6 |
| GSMUA_Achr4P03250_001 | Banana | cytosol | 41.06 | 42.17 |
| Solyc03g115150.2.1 | Tomato | cytosol | 39.3 | 41.42 |
| Zm00001d006780_P011 | Maize | cytosol | 39.44 | 38.21 |
| EER97493 | Sorghum | plastid | 38.56 | 37.41 |
| Os07t0602200-01 | Rice | cytosol, nucleus, plastid | 37.24 | 36.55 |
| TraesCS2B01G204100.1 | Wheat | cytosol | 36.66 | 36.08 |
| HORVU2Hr1G032540.2 | Barley | plastid | 38.71 | 36.02 |
| TraesCS2A01G177100.1 | Wheat | cytosol | 36.51 | 35.93 |
| TraesCS2D01G185200.1 | Wheat | cytosol, golgi | 36.36 | 35.79 |
| AT3G18520.2 | Thale cress | cytosol | 23.17 | 28.01 |
| AT1G08460.1 | Thale cress | cytosol | 14.96 | 27.06 |
| AT4G33470.1 | Thale cress | plastid | 15.98 | 25.77 |
| AT4G38130.1 | Thale cress | nucleus | 14.96 | 20.36 |
| AT3G44680.1 | Thale cress | cytosol | 12.02 | 19.25 |
| AT5G35600.1 | Thale cress | cytosol | 11.0 | 18.34 |
| AT5G63110.1 | Thale cress | nucleus | 12.46 | 18.05 |
| AT5G26040.2 | Thale cress | endoplasmic reticulum | 9.24 | 16.28 |
| AT3G44490.1 | Thale cress | cytosol | 1.91 | 8.23 |
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 1.61 | 7.75 |
Protein Annotations
| MapMan:12.3.2.1.2 | Gene3D:3.40.800.20 | EntrezGene:836228 | ProteinID:AED97419.1 | EMBL:AF510670 | ArrayExpress:AT5G61070 |
| EnsemblPlantsGene:AT5G61070 | RefSeq:AT5G61070 | TAIR:AT5G61070 | RefSeq:AT5G61070-TAIR-G | EnsemblPlants:AT5G61070.1 | TAIR:AT5G61070.1 |
| Unigene:At.29127 | ProteinID:BAB10370.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006325 | GO:GO:0006338 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010053 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030154 |
| GO:GO:0032041 | GO:GO:0045604 | GO:GO:0070932 | Symbol:HDA18 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | RefSeq:NP_200915.2 | PFAM:PF00850 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0004507 | PO:PO:0009009 | PO:PO:0009010 | PRINTS:PR01270 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF177 |
| UniProt:Q8LRK8 | SUPFAM:SSF52768 | UniParc:UPI000009F901 | InterPro:Ureohydrolase_dom_sf | SEG:seg | : |
Description
HDA18Histone deacetylase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q8LRK8]
Coordinates
chr5:-:24571095..24574387
Molecular Weight (calculated)
76638.6 Da
IEP (calculated)
5.603
GRAVY (calculated)
-0.478
Length
682 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLKFEASSE LRLVDPSVSL TVLRKIRLSH LPDMTMTSES SGKKCGEGDG KVAGKSQRKV GLVYDETMCK HDTPNGKVDV ECPDRIRVIW EKLQLAGVTQ
101: RCVVLGGSKA EDKHLKLVHT KKHVNLVKSI STKKKDSRRN KIASQLDSIY LNGGSSEAAY LAAGSVVKVA EKVAEGELDC GFAIVRPPGH HAESDEAMGF
201: CLFNNVAVAA SFLLNERPDL DVKKILIVDW DIHHGNGTQK MFWKDSRVLI FSVHRHDHGS FYPFGDDGDF NMVGEGPGEG FNINVPWEQG GCGDADYLAV
301: WNHILIPVTK EFKPDIILLS AGFDAAIGDP LGGCCVTPYG YSVMLKKLME FAHGKIVLAL EGGYNLESLG KSSLACVQVL LEDKQIHGSS ETYPLESTRR
401: VIQAVRERLC TYWPSLDASM ASNENLKNPS AERNSADALL REVEELKSLM AARDGELEAR RKELKAKNKE LEANEKELEA GLMLIRARED VICGLHAKIE
501: SLQQERDEAV AKAERIDKEL QEDRARSQEF KEDTEFCLST LRREKELAIM AKNKDLEAKE KELEARLMLV HAREDKIHAK IERLQQERDE AVAKAERIDK
601: ELQEDRSRSR VGNGSFAFSQ EFYEDMDLDE LEPLSPEFNE DMDSEELEPF QVIKKNMERS HKKFIKDMEC IKFIASERAR VL
101: RCVVLGGSKA EDKHLKLVHT KKHVNLVKSI STKKKDSRRN KIASQLDSIY LNGGSSEAAY LAAGSVVKVA EKVAEGELDC GFAIVRPPGH HAESDEAMGF
201: CLFNNVAVAA SFLLNERPDL DVKKILIVDW DIHHGNGTQK MFWKDSRVLI FSVHRHDHGS FYPFGDDGDF NMVGEGPGEG FNINVPWEQG GCGDADYLAV
301: WNHILIPVTK EFKPDIILLS AGFDAAIGDP LGGCCVTPYG YSVMLKKLME FAHGKIVLAL EGGYNLESLG KSSLACVQVL LEDKQIHGSS ETYPLESTRR
401: VIQAVRERLC TYWPSLDASM ASNENLKNPS AERNSADALL REVEELKSLM AARDGELEAR RKELKAKNKE LEANEKELEA GLMLIRARED VICGLHAKIE
501: SLQQERDEAV AKAERIDKEL QEDRARSQEF KEDTEFCLST LRREKELAIM AKNKDLEAKE KELEARLMLV HAREDKIHAK IERLQQERDE AVAKAERIDK
601: ELQEDRSRSR VGNGSFAFSQ EFYEDMDLDE LEPLSPEFNE DMDSEELEPF QVIKKNMERS HKKFIKDMEC IKFIASERAR VL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.