Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48127 | Canola | nucleus | 92.36 | 92.55 |
| CDY16736 | Canola | nucleus | 92.36 | 92.55 |
| Bra035858.1-P | Field mustard | nucleus | 92.36 | 92.55 |
| CDX84385 | Canola | cytosol | 91.51 | 85.35 |
| GSMUA_Achr2P06520_001 | Banana | cytosol | 59.45 | 76.92 |
| KRH54336 | Soybean | cytosol, nucleus, plastid | 26.11 | 76.88 |
| CDY41500 | Canola | cytosol | 91.72 | 75.79 |
| KRH57122 | Soybean | nucleus | 76.43 | 75.63 |
| Bra038607.1-P | Field mustard | cytosol | 91.3 | 75.44 |
| KRH03236 | Soybean | nucleus | 75.58 | 75.42 |
| KRH63609 | Soybean | cytosol | 74.1 | 75.05 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 56.05 | 72.93 |
| EES13744 | Sorghum | cytoskeleton, cytosol, nucleus | 68.79 | 70.74 |
| TraesCS6D01G168400.1 | Wheat | cytosol | 68.58 | 70.52 |
| TraesCS6A01G181100.1 | Wheat | cytosol | 68.58 | 70.52 |
| TraesCS6B01G210200.1 | Wheat | cytosol | 68.58 | 70.52 |
| HORVU6Hr1G038010.6 | Barley | cytosol | 68.37 | 70.15 |
| Os08t0344100-01 | Rice | cytoskeleton, cytosol, nucleus | 67.3 | 69.21 |
| PGSC0003DMT400046818 | Potato | cytosol | 66.24 | 68.42 |
| Solyc03g112410.1.1 | Tomato | cytosol | 65.18 | 68.37 |
| Zm00001d050139_P001 | Maize | nucleus | 68.37 | 65.58 |
| AT5G35600.1 | Thale cress | cytosol | 54.56 | 62.84 |
| KRH54335 | Soybean | cytosol, nucleus, plastid | 31.21 | 62.82 |
| AT4G38130.1 | Thale cress | nucleus | 60.08 | 56.49 |
| AT3G44680.1 | Thale cress | cytosol | 48.41 | 53.52 |
| Zm00001d024221_P001 | Maize | cytosol, nucleus, plastid, vacuole | 15.92 | 38.27 |
| AT3G44490.1 | Thale cress | cytosol | 12.1 | 36.08 |
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 10.83 | 35.92 |
| AT5G26040.2 | Thale cress | endoplasmic reticulum | 19.11 | 23.26 |
| AT1G08460.1 | Thale cress | cytosol | 18.47 | 23.08 |
| AT4G33470.1 | Thale cress | plastid | 15.5 | 17.26 |
| AT3G18520.2 | Thale cress | cytosol | 19.11 | 15.96 |
| AT5G61060.2 | Thale cress | cytosol | 20.17 | 14.31 |
| AT5G61070.1 | Thale cress | cytosol | 18.05 | 12.46 |
Protein Annotations
| MapMan:12.3.2.1.1 | Gene3D:3.40.800.20 | EntrezGene:836431 | UniProt:A0A178URK5 | ProteinID:ACA97992.1 | ProteinID:ACA97993.1 |
| ProteinID:AED97705.1 | EMBL:AF195548 | ArrayExpress:AT5G63110 | EnsemblPlantsGene:AT5G63110 | RefSeq:AT5G63110 | TAIR:AT5G63110 |
| RefSeq:AT5G63110-TAIR-G | EnsemblPlants:AT5G63110.1 | TAIR:AT5G63110.1 | EMBL:AY072201 | EMBL:AY088314 | EMBL:AY142660 |
| Unigene:At.8834 | UniProt:B1PXB9 | ProteinID:BAB10553.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010228 |
| GO:GO:0010431 | GO:GO:0016043 | GO:GO:0016441 | GO:GO:0016458 | GO:GO:0016569 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 | GO:GO:0040029 | GO:GO:0046872 | GO:GO:0070932 |
| Symbol:HDA6 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 |
| RefSeq:NP_201116.1 | ProteinID:OAO96110.1 | PFAM:PF00850 | PIRSF:PIRSF037913 | PO:PO:0000003 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR01270 | PRINTS:PR01271 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF144 | UniProt:Q9FML2 | SUPFAM:SSF52768 |
| UniParc:UPI00000AC57F | InterPro:Ureohydrolase_dom_sf | SEG:seg | : | : | : |
Description
HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
Coordinates
chr5:-:25315506..25318347
Molecular Weight (calculated)
52654.7 Da
IEP (calculated)
4.876
GRAVY (calculated)
-0.494
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.