Factsheet for Bra038607.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000156.1-P
Bra003518.1-P
Bra005000.1-P
Bra007720.1-P
Bra014378.1-P
Bra017044.1-P
Bra017045.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	Bra000156.1-P	AT2G39940.1	12445118
AT5G63110.1	Bra005000.1-P	AT2G39940.1	12445118
AT5G63110.1	Bra017044.1-P	AT2G39940.1	12445118
AT5G63110.1	Bra017045.1-P	AT2G39940.1	12445118
AT5G63110.1	Bra003518.1-P	AT3G62980.1	12445118
AT5G63110.1	Bra007720.1-P	AT3G62980.1	12445118
AT5G63110.1	Bra014378.1-P	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41500	Canola	cytosol	98.95	98.95
CDX84385	Canola	cytosol	86.49	97.62
Bra035858.1-P	Field mustard	nucleus	76.14	92.34
AT5G63110.1	Thale cress	nucleus	75.44	91.3
GSMUA_Achr2P06520_001	Banana	cytosol	48.6	76.1
KRH57122	Soybean	nucleus	62.63	75.0
KRH54336	Soybean	cytosol, nucleus, plastid	21.05	75.0
KRH03236	Soybean	nucleus	61.93	74.79
KRH63609	Soybean	cytosol	60.7	74.41
GSMUA_AchrUn_...	Banana	mitochondrion	45.44	71.55
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	55.96	69.65
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	55.26	68.78
TraesCS6A01G181100.1	Wheat	cytosol	55.09	68.56
TraesCS6B01G210200.1	Wheat	cytosol	55.09	68.56
TraesCS6D01G168400.1	Wheat	cytosol	55.09	68.56
PGSC0003DMT400046818	Potato	cytosol	54.74	68.42
HORVU6Hr1G038010.6	Barley	cytosol	54.91	68.19
Solyc03g112410.1.1	Tomato	cytosol	53.68	68.15
Zm00001d050139_P001	Maize	nucleus	55.61	64.56
KRH54335	Soybean	cytosol, nucleus, plastid	25.96	63.25
Bra019516.1-P	Field mustard	cytosol	42.63	60.6
Bra018073.1-P	Field mustard	cytosol	42.28	60.4
Bra040131.1-P	Field mustard	nucleus	50.88	57.77
Bra019424.1-P	Field mustard	cytosol	40.18	53.76
Bra018072.1-P	Field mustard	cytosol	40.7	52.49
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	12.98	37.76
Bra009877.1-P	Field mustard	cytosol	15.61	25.5
Bra031628.1-P	Field mustard	cytosol	14.39	21.24
Bra029339.1-P	Field mustard	cytosol	15.26	18.09
Bra001708.1-P	Field mustard	nucleus	12.46	17.03
Bra011444.1-P	Field mustard	golgi, vacuole	13.16	16.7
Bra022329.1-P	Field mustard	nucleus	15.44	15.44
Bra035942.1-P	Field mustard	peroxisome	16.84	14.77
Bra012984.1-P	Field mustard	nucleus	16.67	14.68

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra038607	EnsemblPlants:Bra038607.1	EnsemblPlants:Bra038607.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M4FBZ1	PFAM:PF00850	PRINTS:PR01270
PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	UniParc:UPI000253F243	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

AT5G63110 (E=5e-261) HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase

Coordinates

chrA06:-:14144313..14146932

Molecular Weight (calculated)

64281.6 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.494

Length

570 amino acids

Sequence
(BLAST)

001: METDESGVSL ASGPDGRKRR VSYFYEPTIG NYYYGQGHPM KPHRIRMAHS LIVHYNLHRR LEISRPYLAD AADIGRFHSP EYVDFLRSVS PESVGDSSAR
101: NLRRFNVGED CPVFDGLFEF CRASAGGSIG AAVKLNRQDA DIAINWGGGL HHAKKSEASG FCYVNDIVLG ILELLKMFRR VLYIDIDVHH GDGVEEAFYT
201: TDRVMTVSFH KFGDFFPGTG HIRDVGAEKG KYYALNVPLN DGMDDESFRS LFRPLIQKVM EVYRPEAVVL QCGADSLSGD RLGCFNLSVK GHADCLRFLR
301: SYNVPLMVLG GGGYTIRNVA RCWCYETAVA VGGEPGNKRP YNEYFEYFGP DYTLHVEPGP MENLNTPKDM ERIRNTLLEQ LSGLIHAPSV PFQHTPPVNR
401: VLDEPEEDLE KRPKPRIWSG TANYESDSDD DEKPLGGFSG INGATMDRDS TGEDEMEDDS AEPEKPFCFG LKSHYLRAAI AEDALNTSVK TGFSGSLVDL
501: FSEGRVMKEL QRSKCIGKIE EYVEEEREED VWKLRIQRER WRFGYGGNIE PGEPIFDDKL AICSNTWIWE

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.