Factsheet for Bra018072.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48160	Canola	cytosol	89.59	96.82
CDY39570	Canola	cytosol	86.43	93.4
Bra018073.1-P	Field mustard	cytosol	68.55	75.94
Bra019516.1-P	Field mustard	cytosol	68.78	75.81
AT5G35600.1	Thale cress	cytosol	57.92	62.59
Bra035858.1-P	Field mustard	nucleus	53.17	50.0
Bra019424.1-P	Field mustard	cytosol	40.27	41.78
Bra040131.1-P	Field mustard	nucleus	46.38	40.84
Bra038607.1-P	Field mustard	cytosol	52.49	40.7
Bra009877.1-P	Field mustard	cytosol	17.42	22.06
Bra031628.1-P	Field mustard	cytosol	14.93	17.1
Bra029339.1-P	Field mustard	cytosol	16.52	15.18
Bra011444.1-P	Field mustard	golgi, vacuole	13.57	13.36
Bra012984.1-P	Field mustard	nucleus	19.23	13.14
Bra035942.1-P	Field mustard	peroxisome	18.1	12.31
Bra001708.1-P	Field mustard	nucleus	11.31	11.99
Bra022329.1-P	Field mustard	nucleus	14.03	10.88

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra018072	EnsemblPlants:Bra018072.1	EnsemblPlants:Bra018072.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872
GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
UniProt:M4DNI5	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625
PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	UniParc:UPI000253F31B	InterPro:Ureohydrolase_dom_sf	:	:

Description

AT5G35600 (E=9e-136) HDA7 | HDA7 (histone deacetylase7); histone deacetylase

Coordinates

chrA06:+:10005499..10008060

Molecular Weight (calculated)

48927.8 Da

IEP (calculated)

4.830

GRAVY (calculated)

-0.198

Length

442 amino acids

Sequence
(BLAST)

001: MENAASLASG PDGKKRRVTY FYEPNIGDGS QRVSQQISTT HNLIRSYHLH NDMDIVRPSL AKDSDFVQFH SPEYIACLAT LTPEYVDMAN KSESVAETTL
101: ELFDLDEWDT PFFPGLIDYC RLYAGGSICA AAKLNRSEAD IAINWSGGMH RAKRDEARGF GYVNDVVLGI LELLKVFKRV LYIDIGYYHG DAVQEAFYKT
201: DRVMTVSFHE SVVQCRGDIT DNGVEKGEYY SLNAPLKNGL DDASFVNLLV PVIHKAMEVY QPEAIVLQCG PDSLAGDALG KFNLTIEGHG ACLGYIRSFN
301: VPLMLLGGQG HTLGNVARCW CYETAVAVGK VIDDDLDTNV SDACFAPGYQ LHIEPNRMKN LNTDEYIAKI KKTLLNQLSQ VIHAPSVQFQ DTPPISQVTE
401: ATVSTTHVDM DQNTRDITTD FVALGNNVRM GRNGSVDLFH DV

Best Arabidopsis Sequence Match ( AT5G35600.1 )
(BLAST)

001: MASLADGGKR RVSYFYEPMI GDYYYGVNQP TKPQRIRVTH NLILSYNLHR HMEINHPDLA DASDFEKFHS LEYINFLKSV TPETVTDPHP SVSENLKRFN
101: VDVDWDGPVF HNLFDYCRAY AGGSISAAAK LNRQEADIAI NWAGGMHHVK KDKASGFGYV NDVVLAILEL LKSFKRVLYI EIGFPHGDEV EEAFKDTDRV
201: MTVSFHKVGD TGDISDYGEG KGQYYSLNAP LKDGLDDFSL RGLFIPVIHR AMEIYEPEVI VLQCGADSLA GDPFGTFNLS IKGHGDCLQY VRSFNVPLMI
301: LGGGGYTLPN VARCWCYETA IAVGEQLDND LPGNDYMKYF RPDYKLHILP TNRQNLNTRL DIITMRETLL AQLSLVMHAP SVPFQDTPSS SQATEAAEVD
401: MEKRNDPRI

Arabidopsis Description

HDA7Histone deacetylase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.