Factsheet for Bra035858.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000156.1-P
Bra003518.1-P
Bra005000.1-P
Bra007720.1-P
Bra014378.1-P
Bra017044.1-P
Bra017045.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	Bra000156.1-P	AT2G39940.1	12445118
AT5G63110.1	Bra005000.1-P	AT2G39940.1	12445118
AT5G63110.1	Bra017044.1-P	AT2G39940.1	12445118
AT5G63110.1	Bra017045.1-P	AT2G39940.1	12445118
AT5G63110.1	Bra003518.1-P	AT3G62980.1	12445118
AT5G63110.1	Bra007720.1-P	AT3G62980.1	12445118
AT5G63110.1	Bra014378.1-P	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16736	Canola	nucleus	100.0	100.0
CDY48127	Canola	nucleus	99.57	99.57
AT5G63110.1	Thale cress	nucleus	92.55	92.36
KRH54336	Soybean	cytosol, nucleus, plastid	26.6	78.12
GSMUA_Achr2P06520_001	Banana	cytosol	59.57	76.92
Bra038607.1-P	Field mustard	cytosol	92.34	76.14
KRH03236	Soybean	nucleus	76.38	76.06
KRH57122	Soybean	nucleus	77.02	76.05
KRH63609	Soybean	cytosol	74.68	75.48
GSMUA_AchrUn_...	Banana	mitochondrion	55.96	72.65
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	67.45	69.21
TraesCS6A01G181100.1	Wheat	cytosol	67.02	68.78
TraesCS6B01G210200.1	Wheat	cytosol	67.02	68.78
TraesCS6D01G168400.1	Wheat	cytosol	67.02	68.78
PGSC0003DMT400046818	Potato	cytosol	66.6	68.64
HORVU6Hr1G038010.6	Barley	cytosol	67.02	68.63
Solyc03g112410.1.1	Tomato	cytosol	65.53	68.6
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	66.6	68.34
Zm00001d050139_P001	Maize	nucleus	67.45	64.56
KRH54335	Soybean	cytosol, nucleus, plastid	31.91	64.1
Bra019516.1-P	Field mustard	cytosol	51.49	60.35
Bra018073.1-P	Field mustard	cytosol	50.85	59.9
Bra040131.1-P	Field mustard	nucleus	60.43	56.57
Bra019424.1-P	Field mustard	cytosol	49.36	54.46
Bra018072.1-P	Field mustard	cytosol	50.0	53.17
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	15.96	38.27
Bra009877.1-P	Field mustard	cytosol	19.15	25.79
Bra031628.1-P	Field mustard	cytosol	18.09	22.02
Bra029339.1-P	Field mustard	cytosol	17.87	17.46
Bra001708.1-P	Field mustard	nucleus	15.11	17.03
Bra011444.1-P	Field mustard	golgi, vacuole	16.17	16.93
Bra022329.1-P	Field mustard	nucleus	18.51	15.26
Bra012984.1-P	Field mustard	nucleus	20.21	14.68
Bra035942.1-P	Field mustard	peroxisome	20.21	14.62

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra035858	EnsemblPlants:Bra035858.1	EnsemblPlants:Bra035858.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M4F458
PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144
SUPFAM:SSF52768	UniParc:UPI0002542112	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:

Description

AT5G63110 (E=7e-251) HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase

Coordinates

chrA09:-:3276812..3280777

Molecular Weight (calculated)

52664.7 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.500

Length

470 amino acids

Sequence
(BLAST)

001: METDESGVSL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIVHYNLHRR LEISRPNLAD ASDIGQFHSP DYVDFLRSVS PESMGDHSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFR RVLYVDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDIGAEK GKYYALNVPL NDGMDDESFR SMFRPLIQKV MDVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSFNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPG PMENLNTPKD MEKIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEEDL EERPKPRIWS GTANYESDSD DDEKSPPLVG YSGINDPPMD RDSTGEDDME DEPEVNPPSS

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.