Factsheet for Zm00001d024221_P001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
plastid 2
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010082_P001
Zm00001d010863_P001
Zm00001d012338_P001
Zm00001d028543_P001
Zm00001d038273_P001
Zm00001d042833_P001
Zm00001d047848_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	Zm00001d010082_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d012338_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d028543_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d038273_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d042833_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d047848_P001	AT2G39940.1	12445118
AT5G63110.1	Zm00001d010863_P001	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54335	Soybean	cytosol, nucleus, plastid	37.76	31.62
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	12.24	24.74
Zm00001d039202_P001	Maize	nucleus	18.37	21.69
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	49.49	21.18
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	48.98	20.96
TraesCS6A01G181100.1	Wheat	cytosol	47.45	20.31
TraesCS6B01G210200.1	Wheat	cytosol	47.45	20.31
TraesCS6D01G168400.1	Wheat	cytosol	47.45	20.31
HORVU6Hr1G038010.6	Barley	cytosol	47.45	20.26
Zm00001d050139_P001	Maize	nucleus	50.0	19.96
GSMUA_Achr2P06520_001	Banana	cytosol	35.71	19.23
Zm00001d016381_P001	Maize	nucleus	39.8	19.12
VIT_17s0000g09070.t01	Wine grape	cytosol	43.37	18.32
KRH57122	Soybean	nucleus	42.86	17.65
PGSC0003DMT400069419	Potato	nucleus	42.35	17.62
KRH03236	Soybean	nucleus	42.35	17.58
KRH63609	Soybean	cytosol	41.33	17.42
Solyc06g071680.2.1	Tomato	cytosol	41.84	17.41
Solyc03g112410.1.1	Tomato	cytosol	37.76	16.48
Zm00001d018346_P001	Maize	mitochondrion	18.37	16.29
PGSC0003DMT400046818	Potato	cytosol	37.76	16.23
Bra035858.1-P	Field mustard	nucleus	38.27	15.96
CDY48127	Canola	nucleus	38.27	15.96
CDY16736	Canola	nucleus	38.27	15.96
AT5G63110.1	Thale cress	nucleus	38.27	15.92
Zm00001d053595_P004	Maize	nucleus	39.8	15.09
Zm00001d046388_P001	Maize	nucleus	40.31	14.88
CDX84385	Canola	cytosol	37.76	14.65
Zm00001d003813_P001	Maize	cytosol	33.16	14.54
GSMUA_AchrUn_...	Banana	mitochondrion	25.51	13.81
CDY41500	Canola	cytosol	37.76	12.98
Bra038607.1-P	Field mustard	cytosol	37.76	12.98
Zm00001d046348_P003	Maize	plastid	14.8	7.61
Zm00001d042974_P001	Maize	mitochondrion	6.12	5.58
Zm00001d010152_P002	Maize	cytosol	14.29	4.97
Zm00001d010162_P002	Maize	cytosol	14.29	4.97
Zm00001d018864_P002	Maize	nucleus	14.8	4.68
Zm00001d006780_P011	Maize	cytosol	15.31	4.26
KRH54336	Soybean	cytosol, nucleus, plastid	3.06	3.75

Protein Annotations

Gene3D:3.40.800.20	MapMan:35.1	UniProt:A0A1D6IY46	ProteinID:AQK40831.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850
PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	TMHMM:TMhelix	UniParc:UPI0002220CA4
InterPro:Ureohydrolase_dom_sf	EnsemblPlantsGene:Zm00001d024221	EnsemblPlants:Zm00001d024221_P001	EnsemblPlants:Zm00001d024221_T001	SEG:seg	:

Description

Histone deacetylase 19

Coordinates

chr10:+:57982709..57983343

Molecular Weight (calculated)

21684.3 Da

IEP (calculated)

7.162

GRAVY (calculated)

0.248

Length

196 amino acids

Sequence
(BLAST)

001: MAASSEGMLL PSLVNEEDVH RRSARSPDEA LSHPHGALAG SPLCPPPPPR SSPTPYPASK VDIRCFHFDD YVTFLASTTG KPGVLNSCAI KRFNIGEDCP
101: MFDSFFISLL PVLYWGSIDA AINLNHVDAN ITVNWAASLH RAKKSEASRF CYVNNIVLAV LELLMFHRAR MLIYLLLLTF NIWTLVFIFG GASLLY

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.