Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH54336 | Soybean | cytosol, nucleus, plastid | 30.75 | 89.38 |
KRH54335 | Soybean | cytosol, nucleus, plastid | 40.0 | 79.49 |
VIT_17s0000g09070.t01 | Wine grape | cytosol | 78.28 | 78.45 |
KRH03236 | Soybean | nucleus | 78.92 | 77.75 |
KRH57122 | Soybean | nucleus | 78.92 | 77.1 |
GSMUA_Achr2P06520_001 | Banana | cytosol | 59.78 | 76.37 |
PGSC0003DMT400069419 | Potato | nucleus | 76.56 | 75.58 |
Solyc06g071680.2.1 | Tomato | cytosol | 76.56 | 75.58 |
Bra035858.1-P | Field mustard | nucleus | 75.48 | 74.68 |
CDY16736 | Canola | nucleus | 75.48 | 74.68 |
CDY48127 | Canola | nucleus | 75.27 | 74.47 |
AT5G63110.1 | Thale cress | nucleus | 75.05 | 74.1 |
GSMUA_AchrUn_... | Banana | mitochondrion | 57.2 | 73.48 |
EES13744 | Sorghum | cytoskeleton, cytosol, nucleus | 70.11 | 71.18 |
KRH63610 | Soybean | cytosol | 29.89 | 70.56 |
TraesCS6A01G181100.1 | Wheat | cytosol | 69.25 | 70.31 |
TraesCS6B01G210200.1 | Wheat | cytosol | 69.25 | 70.31 |
TraesCS6D01G168400.1 | Wheat | cytosol | 69.25 | 70.31 |
HORVU6Hr1G038010.6 | Barley | cytosol | 69.25 | 70.15 |
Solyc03g112410.1.1 | Tomato | cytosol | 67.31 | 69.71 |
Os08t0344100-01 | Rice | cytoskeleton, cytosol, nucleus | 68.39 | 69.43 |
PGSC0003DMT400046818 | Potato | cytosol | 67.96 | 69.3 |
CDX84385 | Canola | cytosol | 74.84 | 68.91 |
Zm00001d050139_P001 | Maize | nucleus | 69.89 | 66.19 |
CDY41500 | Canola | cytosol | 74.84 | 61.05 |
Bra038607.1-P | Field mustard | cytosol | 74.41 | 60.7 |
KRH27562 | Soybean | nucleus | 62.37 | 58.35 |
KRH60609 | Soybean | nucleus | 61.94 | 57.95 |
KRH77972 | Soybean | nucleus | 61.94 | 57.95 |
KRH51318 | Soybean | nucleus | 61.51 | 57.55 |
KRH25183 | Soybean | cytosol | 49.03 | 53.15 |
KRH30495 | Soybean | cytosol | 48.82 | 52.91 |
KRH16462 | Soybean | nucleus | 7.74 | 46.15 |
Zm00001d024221_P001 | Maize | cytosol, nucleus, plastid, vacuole | 17.42 | 41.33 |
KRH05486 | Soybean | cytosol | 18.71 | 25.0 |
KRH26679 | Soybean | cytosol | 17.42 | 21.26 |
KRH59585 | Soybean | plastid | 18.06 | 20.0 |
KRH56687 | Soybean | nucleus | 16.56 | 18.47 |
KRH03799 | Soybean | nucleus | 17.85 | 15.29 |
KRH56821 | Soybean | nucleus | 21.51 | 15.24 |
KRH03123 | Soybean | cytosol | 21.08 | 14.94 |
Protein Annotations
EntrezGene:100801159 | MapMan:12.3.2.1.1 | Gene3D:3.40.800.20 | EMBL:ACUP02002703 | EnsemblPlantsGene:GLYMA_04G187000 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 |
GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 | GO:GO:0046872 | GO:GO:0070932 |
InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | UniProt:K7KKZ9 |
EnsemblPlants:KRH63609 | ProteinID:KRH63609 | ProteinID:KRH63609.1 | PFAM:PF00850 | PIRSF:PIRSF037913 | PRINTS:PR01270 |
PRINTS:PR01271 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF144 | SUPFAM:SSF52768 | UniParc:UPI00029506C8 | InterPro:Ureohydrolase_dom_sf |
SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:45732434..45737110
Molecular Weight (calculated)
52185.3 Da
IEP (calculated)
5.223
GRAVY (calculated)
-0.444
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGERAETE SGVSLPSVGT DAKKRRVTYF YEPCIGDYYY GQGHPMKPHR IRMAHNLIVH YGLHRRMQVN RPFPAAEADI GRFHADDYVD FLSTVSPQIL
101: SENSHSHYRQ LKRFNVGEDC PVFDGLFDFC RASAGGSIGA AVRLNREDAD VAINWAGGLH HAKKAEASGF CYVNDIVLGI LELLKVHRRV LYIDIDVHHG
201: DGVEEAFYTT DRVMTVSFHK FGDFFPGTGH IKDIGVGAGK NYSLNVPLND GLDDETFRGL FRPIIQKVMD VYQPDAVVLQ CGADSLSGDR LGCFNLTVKG
301: HADCLRFLRS FNVPLMVLGG GGYTVRNVAR CWCYETAVAV GVEPSPKLPY NEYYEYFGPD YNLHVEPSTM ENLNTPRDLE KIRNTLLEQL SRLPHAPSAP
401: FQTTPSVIEV PEEEEEDMDV RPKRRIWSGE DFDSDHDDDM ASSKNSDLTA QTSRSVADDM DEDKD
101: SENSHSHYRQ LKRFNVGEDC PVFDGLFDFC RASAGGSIGA AVRLNREDAD VAINWAGGLH HAKKAEASGF CYVNDIVLGI LELLKVHRRV LYIDIDVHHG
201: DGVEEAFYTT DRVMTVSFHK FGDFFPGTGH IKDIGVGAGK NYSLNVPLND GLDDETFRGL FRPIIQKVMD VYQPDAVVLQ CGADSLSGDR LGCFNLTVKG
301: HADCLRFLRS FNVPLMVLGG GGYTVRNVAR CWCYETAVAV GVEPSPKLPY NEYYEYFGPD YNLHVEPSTM ENLNTPRDLE KIRNTLLEQL SRLPHAPSAP
401: FQTTPSVIEV PEEEEEDMDV RPKRRIWSGE DFDSDHDDDM ASSKNSDLTA QTSRSVADDM DEDKD
001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S
Arabidopsis Description
HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.