CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92429
KRG92430
KRH03236
KRH28611
KRH34375
KRH34377
KRH54335
KRH54336
KRH57122
KRH63609
KRH69048
KRH76867

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	KRG92429	AT1G04250.1	11713520
AT3G62980.1	KRH34377	AT1G04250.1	11713520
AT3G62980.1	KRG92429	AT3G23050.1	11713520
AT3G62980.1	KRH34377	AT3G23050.1	11713520
AT3G62980.1	KRG92430	AT4G14560.1	15546359
AT3G62980.1	KRH34375	AT4G14560.1	15546359
AT3G62980.1	KRH69048	AT4G14560.1	15546359
AT3G62980.1	KRH28611	AT4G36800.1	12682009
AT3G62980.1	KRH76867	AT4G36800.1	12682009
AT3G62980.1	KRH03236	AT5G63110.1	12445118
AT3G62980.1	KRH54335	AT5G63110.1	12445118
AT3G62980.1	KRH54336	AT5G63110.1	12445118
AT3G62980.1	KRH57122	AT5G63110.1	12445118
AT3G62980.1	KRH63609	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31921	Soybean	cytosol	98.12	98.12
KRG96377	Soybean	cytosol	85.98	85.69
KRH68108	Soybean	cytosol	84.62	84.47
VIT_07s0104g01320.t01	Wine grape	cytosol	79.49	80.73
CDY68868	Canola	cytosol	73.33	79.44
AT3G62980.1	Thale cress	cytosol	80.0	78.79
CDY53998	Canola	cytosol	78.12	78.25
Solyc06g008440.1.1	Tomato	extracellular	8.55	78.12
CDY11468	Canola	cytosol	79.32	77.98
Bra007720.1-P	Field mustard	cytosol	78.97	77.65
PGSC0003DMT400029517	Potato	cytosol	77.09	77.62
Solyc09g074520.2.1	Tomato	cytosol	76.92	77.45
CDX76680	Canola	cytosol	78.63	77.31
Solyc06g008470.1.1	Tomato	extracellular	7.52	77.19
Bra003518.1-P	Field mustard	cytosol	77.95	76.77
PGSC0003DMT400053430	Potato	cytosol	34.36	74.72
PGSC0003DMT400061752	Potato	plastid	72.31	72.93
PGSC0003DMT400056570	Potato	cytosol	74.02	72.9
CDX67912	Canola	endoplasmic reticulum, golgi	78.12	70.85
Solyc06g008810.2.1	Tomato	cytosol	50.94	70.78
PGSC0003DMT400093216	Potato	mitochondrion	18.29	69.93
Solyc06g008460.1.1	Tomato	extracellular	28.03	69.2
GSMUA_Achr5P26930_001	Banana	cytosol	54.36	68.53
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	16.24	67.86
Bra014378.1-P	Field mustard	cytosol	72.14	67.41
CDX89163	Canola	cytosol	71.79	67.09
GSMUA_Achr3P23850_001	Banana	cytosol	65.13	65.46
Zm00001d010863_P001	Maize	plastid	61.03	60.51
Os05t0150500-00	Rice	plastid	60.68	60.48
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	60.85	60.44
KXG21312	Sorghum	plastid	60.85	60.24
TraesCS1A01G091300.1	Wheat	cytosol	60.85	60.14
PGSC0003DMT400008765	Potato	cytosol	10.94	59.81
TraesCS1D01G099900.1	Wheat	cytosol	60.85	59.33
KRH06858	Soybean	cytosol	57.78	59.09
KRG94665	Soybean	cytosol	57.78	59.09
Solyc06g008780.1.1	Tomato	extracellular	49.57	58.47
KRH70053	Soybean	cytosol	56.75	57.94
HORVU1Hr1G021550.4	Barley	cytosol	60.34	54.98
KRH08397	Soybean	cytosol	53.85	54.97
Solyc05g009260.1.1	Tomato	extracellular	7.52	54.32
KRH49941	Soybean	cytosol	51.11	51.73
KRH41935	Soybean	cytosol	50.94	51.47
KRH52925	Soybean	cytosol	49.4	49.23
KRH62206	Soybean	cytosol	48.89	49.06
Solyc06g007840.2.1	Tomato	extracellular, plastid	6.84	48.78
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	9.4	48.25
KRH72427	Soybean	cytosol	49.06	45.56
KRH16819	Soybean	cytosol	48.89	44.69
Solyc06g084490.1.1	Tomato	plastid	14.19	39.52
KRH14993	Soybean	cytosol	30.77	31.69
KRH73146	Soybean	cytosol	31.45	31.51
KRG97777	Soybean	cytosol	31.62	31.36
KRH31107	Soybean	cytosol	31.62	31.36

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100809794	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02000903
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_02G152800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1JFG2	InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH71533	ProteinID:KRH71533	ProteinID:KRH71533.1
ProteinID:KRH71534.1	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7
SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002336E22	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:15691669..15694939

Molecular Weight (calculated)

65530.3 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.024

Length

585 amino acids

Sequence
(BLAST)

001: MRPRVAYSFP EEVLEHVFSF IECDKDRGSI SLVCKSWYEI ERWCRRRVFV GNCYAVSPAT VVNRFPKVRS IAIKGKPHFA DFNLVPEGWG AYVGPWIKAM
101: AAAYPWLQEI RLKRMVIADE CLELIAKSFK NFQVLVLTSC EGFTTDGLAA IAANCRNLRE LELRESEVDD ICGHWLSHFP DSYTSLVSLN ISCLGNEVNL
201: SALERLVSRC PNLQTLRLNR AVPLDRLATL LRGAPQLVEL GTGAYTTEMR PEVFTNLAEA FSGCKQLKGL SGFWDVLPSY LPAVYPICSN LTSLNLSYAT
301: IQSPDLIKLV GQCESLQRLW VLDYIEDAGL EVIAASCKDL RELRVFPSDP FGLEPNVALT EQGLVSVSEG CTKLQSVLYF CRQMSNAALD TIARSRPNMT
401: RFRLCIIEPR APDYLTHQPL DAGFGAIVEH CKDLQRLSLS GLLTDRVFEY IGTYGKKLEM LSVAFAGDSD LGLHHVLSGC DNLRKLEIRD CPFGDKALLA
501: NAAKLETMRS LWMSSCLVSY GACKLLGQKM PRLNVEVIDE RGPPDSRPES SPVEKLYIYR TVSGPRLDMP GYVWRMQDDS ALRIS

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.