Factsheet for Solyc06g084490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Solyc09g083290.2.1	AT1G04250.1	11713520
AT3G62980.1	Solyc09g083290.2.1	AT3G23050.1	11713520
AT3G62980.1	Solyc04g054280.1.1	AT4G14560.1	15546359
AT3G62980.1	Solyc06g053840.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc09g083280.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc04g079970.2.1	AT4G36800.1	12682009
AT3G62980.1	Solyc12g089030.1.1	AT4G36800.1	12682009
AT3G62980.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061752	Potato	plastid	55.24	20.0
CDY68868	Canola	cytosol	39.05	15.19
Solyc09g074520.2.1	Tomato	cytosol	40.48	14.63
KRH68108	Soybean	cytosol	40.48	14.51
Solyc06g008460.1.1	Tomato	extracellular	16.19	14.35
KRG96377	Soybean	cytosol	40.0	14.31
KRH71533	Soybean	cytosol	39.52	14.19
Bra007720.1-P	Field mustard	cytosol	40.0	14.12
CDX76680	Canola	cytosol	40.0	14.12
CDY11468	Canola	cytosol	40.0	14.12
KRH31921	Soybean	cytosol	39.05	14.02
CDY53998	Canola	cytosol	38.57	13.87
AT3G62980.1	Thale cress	cytosol	39.05	13.8
Bra003518.1-P	Field mustard	cytosol	38.1	13.47
CDX89163	Canola	cytosol	37.14	12.46
Bra014378.1-P	Field mustard	cytosol	37.14	12.46
CDX67912	Canola	endoplasmic reticulum, golgi	38.1	12.4
GSMUA_Achr3P23850_001	Banana	cytosol	34.29	12.37
Solyc06g008810.2.1	Tomato	cytosol	24.76	12.35
Solyc06g008470.1.1	Tomato	extracellular	3.33	12.28
Os05t0150500-00	Rice	plastid	32.86	11.75
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	32.86	11.71
TraesCS1A01G091300.1	Wheat	cytosol	32.86	11.66
TraesCS1D01G099900.1	Wheat	cytosol	32.86	11.5
Solyc02g079190.2.1	Tomato	cytosol	31.9	11.41
KXG21312	Sorghum	plastid	31.9	11.34
Solyc05g009260.1.1	Tomato	extracellular	4.29	11.11
Zm00001d010863_P001	Maize	plastid	30.95	11.02
Solyc06g008780.1.1	Tomato	extracellular	24.76	10.48
Solyc04g074980.2.1	Tomato	cytosol	30.95	10.43
GSMUA_Achr5P26930_001	Banana	cytosol	22.86	10.34
HORVU1Hr1G021550.4	Barley	cytosol	30.95	10.12
Solyc05g052620.2.1	Tomato	cytosol	21.9	7.63
Solyc06g008440.1.1	Tomato	extracellular	1.9	6.25
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	3.33	6.14
Solyc06g007840.2.1	Tomato	extracellular, plastid	1.9	4.88

Protein Annotations

EnsemblPlants:Solyc06g084490.1.1	EnsemblPlantsGene:Solyc06g084490.1	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SEG:seg	UniParc:UPI000276B9CF	UniProt:K4CAV4	MapMan:21.4.1.1.1

Description

No Description!

Coordinates

chr6:+:49582194..49583776

Molecular Weight (calculated)

23077.7 Da

IEP (calculated)

6.332

GRAVY (calculated)

0.186

Length

210 amino acids

Sequence
(BLAST)

001: MRASTISAAP SLSPDITPLL SDSSLPTIPS TLSPPNPDAM VAPGPFQHQF LVQFWYLDRN SVSLVSKSWY ELERRSKRSG FISNCYAVSP EIMIARFPQL
101: TSICSLVSLN IFCLGPEISL SNLESLIARS PNLNTLRLSQ AVPLEKLPHI LSCASQLVEF STGAYSSDLH SHVFSNLQQA FSGCNILQGL SGFCISILIP
201: VTDPYVYHWE

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.