Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68868 | Canola | cytosol | 85.19 | 93.7 |
| CDY11468 | Canola | cytosol | 93.27 | 93.11 |
| CDX76680 | Canola | cytosol | 92.93 | 92.77 |
| Bra007720.1-P | Field mustard | cytosol | 92.76 | 92.61 |
| CDY53998 | Canola | cytosol | 90.74 | 92.29 |
| Bra003518.1-P | Field mustard | cytosol | 91.92 | 91.92 |
| CDX67912 | Canola | endoplasmic reticulum, golgi | 92.26 | 84.96 |
| Bra014378.1-P | Field mustard | cytosol | 85.35 | 80.99 |
| CDX89163 | Canola | cytosol | 84.85 | 80.51 |
| VIT_07s0104g01320.t01 | Wine grape | cytosol | 77.95 | 80.38 |
| KRH71533 | Soybean | cytosol | 78.79 | 80.0 |
| KRH31921 | Soybean | cytosol | 78.11 | 79.32 |
| KRH68108 | Soybean | cytosol | 77.44 | 78.5 |
| KRG96377 | Soybean | cytosol | 77.44 | 78.36 |
| Solyc09g074520.2.1 | Tomato | cytosol | 76.26 | 77.97 |
| PGSC0003DMT400029517 | Potato | cytosol | 75.76 | 77.45 |
| Solyc06g008440.1.1 | Tomato | extracellular | 8.25 | 76.56 |
| PGSC0003DMT400053430 | Potato | cytosol | 34.18 | 75.46 |
| Solyc06g008470.1.1 | Tomato | extracellular | 7.24 | 75.44 |
| PGSC0003DMT400061752 | Potato | plastid | 72.05 | 73.79 |
| PGSC0003DMT400056570 | Potato | cytosol | 72.56 | 72.56 |
| PGSC0003DMT400093216 | Potato | mitochondrion | 18.69 | 72.55 |
| AT4G03190.1 | Thale cress | cytosol, plastid | 67.85 | 68.89 |
| Solyc06g008810.2.1 | Tomato | cytosol | 48.32 | 68.17 |
| Solyc06g008460.1.1 | Tomato | extracellular | 27.1 | 67.93 |
| PGSC0003DMT400013682 | Potato | cytosol, mitochondrion | 15.82 | 67.14 |
| GSMUA_Achr5P26930_001 | Banana | cytosol | 51.85 | 66.38 |
| GSMUA_Achr3P23850_001 | Banana | cytosol | 62.29 | 63.57 |
| PGSC0003DMT400008765 | Potato | cytosol | 10.94 | 60.75 |
| AT3G26810.1 | Thale cress | cytosol | 58.42 | 60.35 |
| KXG21312 | Sorghum | plastid | 59.76 | 60.07 |
| Zm00001d010863_P001 | Maize | plastid | 59.43 | 59.83 |
| Os05t0150500-00 | Rice | plastid | 58.92 | 59.63 |
| AT1G12820.1 | Thale cress | cytosol | 57.24 | 58.93 |
| TraesCS1A01G091300.1 | Wheat | cytosol | 58.42 | 58.61 |
| TraesCS1B01G119100.1 | Wheat | cytosol, peroxisome, plastid | 58.08 | 58.57 |
| TraesCS1D01G099900.1 | Wheat | cytosol | 58.25 | 57.67 |
| Solyc06g008780.1.1 | Tomato | extracellular | 47.81 | 57.26 |
| Solyc05g009260.1.1 | Tomato | extracellular | 7.41 | 54.32 |
| Solyc06g007840.2.1 | Tomato | extracellular, plastid | 7.41 | 53.66 |
| HORVU1Hr1G021550.4 | Barley | cytosol | 57.74 | 53.43 |
| Solyc06g007830.1.1 | Tomato | endoplasmic reticulum, extracellular | 9.43 | 49.12 |
| AT5G49980.1 | Thale cress | nucleus | 47.98 | 46.04 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 46.46 | 44.3 |
| Solyc06g084490.1.1 | Tomato | plastid | 13.8 | 39.05 |
| AT2G39940.1 | Thale cress | cytosol | 30.81 | 30.91 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | PDB:2P1M | PDB:2P1N | PDB:2P1O |
| PDB:2P1P | PDB:2P1Q | Gene3D:3.80.10.10 | PDB:3C6N | PDB:3C6O | PDB:3C6P |
| EntrezGene:825473 | UniProt:A0A178VA54 | ProteinID:AAB69175.1 | ProteinID:ABR04117.1 | ProteinID:ABR04118.1 | ProteinID:ABR04119.1 |
| ProteinID:ABR04120.1 | ProteinID:ABR04121.1 | ProteinID:ABR04122.1 | ProteinID:ABR04123.1 | ProteinID:ABR04124.1 | ProteinID:ABR04125.1 |
| ProteinID:ABR04126.1 | ProteinID:ABR04127.1 | ProteinID:ABR04128.1 | ProteinID:ABR04129.1 | ProteinID:ABR04130.1 | ProteinID:ABR04131.1 |
| ProteinID:ABR04132.1 | ProteinID:ABR04133.1 | ProteinID:ABR04134.1 | ProteinID:ABR04135.1 | ProteinID:ABR04136.1 | ProteinID:ABR04137.1 |
| ProteinID:ABR04138.1 | ProteinID:ABR04139.1 | ProteinID:ABR04140.1 | ProteinID:ACB31753.1 | ProteinID:ACB31754.1 | ProteinID:ACB31755.1 |
| ProteinID:ACB31756.1 | ProteinID:ACB31757.1 | ProteinID:ACB31758.1 | ProteinID:ACB31759.1 | ProteinID:ACB31760.1 | ProteinID:ACB31761.1 |
| ProteinID:ACB31762.1 | ProteinID:ACB31763.1 | ProteinID:ACB31764.1 | ProteinID:ACB31765.1 | ProteinID:ACB31766.1 | ProteinID:ACB31767.1 |
| ProteinID:ACB31768.1 | ProteinID:ACB31769.1 | ProteinID:ACB31770.1 | ProteinID:ACB31771.1 | ProteinID:ACB31772.1 | ProteinID:ACB31773.1 |
| ProteinID:ACB31774.1 | ProteinID:ACB31775.1 | ProteinID:ACB31776.1 | ProteinID:AEE80419.1 | EMBL:AF005048 | EMBL:AK220790 |
| ArrayExpress:AT3G62980 | EnsemblPlantsGene:AT3G62980 | RefSeq:AT3G62980 | TAIR:AT3G62980 | RefSeq:AT3G62980-TAIR-G | EnsemblPlants:AT3G62980.1 |
| TAIR:AT3G62980.1 | EMBL:BT001946 | ProteinID:CAB87743.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0000003 |
| GO:GO:0000822 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0004871 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007049 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009733 |
| GO:GO:0009734 | GO:GO:0009791 | GO:GO:0009873 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0009991 |
| GO:GO:0010011 | GO:GO:0010152 | GO:GO:0010311 | GO:GO:0016036 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019005 | GO:GO:0019538 | GO:GO:0038023 | GO:GO:0038198 | GO:GO:0048443 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | RefSeq:NP_567135.1 | ProteinID:OAP01863.1 | PFAM:PF12937 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0009066 | PO:PO:0009067 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF7 | UniProt:Q570C0 | SMART:SM00256 |
| SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | Symbol:TIR1 | UniParc:UPI000000BD5C | : |
Description
TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
Coordinates
chr3:-:23273065..23276630
Molecular Weight (calculated)
66802.2 Da
IEP (calculated)
7.209
GRAVY (calculated)
0.009
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.