Factsheet for Os05t0150500-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0190300-01
Os01t0741900-01
Os01t0935300-02
Os02t0228900-01
Os03t0633500-01
Os03t0633800-01
Os03t0742900-01
Os03t0797800-01
Os05t0193900-00
Os05t0523300-01
Os07t0182400-01
Os08t0344100-01
Os08t0374100-01
Os09t0321900-01
Os10t0190000-02
Os12t0601300-01
Os12t0601400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Os03t0633500-01	AT1G04250.1	11713520
AT3G62980.1	Os03t0742900-01	AT1G04250.1	11713520
AT3G62980.1	Os12t0601300-01	AT1G04250.1	11713520
AT3G62980.1	Os03t0633500-01	AT3G23050.1	11713520
AT3G62980.1	Os03t0742900-01	AT3G23050.1	11713520
AT3G62980.1	Os12t0601300-01	AT3G23050.1	11713520
AT3G62980.1	Os03t0633800-01	AT4G14560.1	15546359
AT3G62980.1	Os03t0797800-01	AT4G14560.1	15546359
AT3G62980.1	Os07t0182400-01	AT4G14560.1	15546359
AT3G62980.1	Os12t0601400-01	AT4G14560.1	15546359
AT3G62980.1	Os08t0374100-01	AT4G36800.1	12682009
AT3G62980.1	Os09t0321900-01	AT4G36800.1	12682009
AT3G62980.1	Os10t0190000-02	AT4G36800.1	12682009
AT3G62980.1	Os08t0344100-01	AT5G63110.1	12445118
AT4G03190.1	Os03t0633500-01	AT3G23050.1	15992545
AT4G03190.1	Os03t0742900-01	AT3G23050.1	15992545
AT4G03190.1	Os12t0601300-01	AT3G23050.1	15992545
AT4G03190.1	Os01t0935300-02	AT4G02570.1	15992545
AT4G03190.1	Os05t0193900-00	AT4G02570.1	15992545
AT4G03190.1	Os01t0190300-01	AT5G25890.1	21734647
AT4G03190.1	Os01t0741900-01	AT5G25890.1	21734647
AT4G03190.1	Os02t0228900-01	AT5G25890.1	21734647
AT4G03190.1	Os05t0523300-01	AT5G25890.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21312	Sorghum	plastid	91.65	91.03
Zm00001d010863_P001	Maize	plastid	90.29	89.83
TraesCS1A01G091300.1	Wheat	cytosol	89.95	89.19
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	89.44	89.13
TraesCS1D01G099900.1	Wheat	cytosol	90.12	88.17
HORVU1Hr1G021550.4	Barley	cytosol	87.56	80.06
GSMUA_Achr5P26930_001	Banana	cytosol	57.58	72.84
Solyc06g008470.1.1	Tomato	extracellular	6.98	71.93
GSMUA_Achr3P23850_001	Banana	cytosol	70.87	71.48
Solyc06g008440.1.1	Tomato	extracellular	6.98	64.06
PGSC0003DMT400093216	Potato	mitochondrion	16.7	64.05
VIT_07s0104g01320.t01	Wine grape	cytosol	61.33	62.5
Solyc09g074520.2.1	Tomato	cytosol	61.84	62.48
PGSC0003DMT400029517	Potato	cytosol	61.33	61.96
VIT_14s0030g01240.t01	Wine grape	cytosol	61.16	61.79
KRG96377	Soybean	cytosol	61.33	61.33
PGSC0003DMT400053430	Potato	cytosol	27.94	60.97
CDY68868	Canola	cytosol	56.05	60.93
KRH31921	Soybean	cytosol	60.48	60.68
KRH71533	Soybean	cytosol	60.48	60.68
KRH68108	Soybean	cytosol	60.48	60.58
CDY53998	Canola	cytosol	60.14	60.45
PGSC0003DMT400061752	Potato	plastid	58.6	59.31
AT4G03190.1	Thale cress	cytosol, plastid	58.94	59.15
Bra003518.1-P	Field mustard	cytosol	59.8	59.09
AT3G62980.1	Thale cress	cytosol	59.63	58.92
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	14.65	58.5
Bra034191.1-P	Field mustard	cytosol	58.26	58.46
Bra000842.1-P	Field mustard	cytosol	58.26	58.36
CDY53774	Canola	cytosol	58.26	58.36
Bra007720.1-P	Field mustard	cytosol	58.94	58.15
CDY11468	Canola	cytosol	58.94	58.15
PGSC0003DMT400056570	Potato	cytosol	58.77	58.08
CDX76680	Canola	cytosol	58.77	57.98
CDX90899	Canola	cytosol	57.75	57.85
Os04t0395600-01	Rice	cytosol	56.39	57.57
Solyc06g008460.1.1	Tomato	extracellular	23.17	57.38
Solyc06g008810.2.1	Tomato	cytosol	40.37	56.29
PGSC0003DMT400008765	Potato	cytosol	10.05	55.14
CDX67912	Canola	endoplasmic reticulum, golgi	59.8	54.42
CDY21947	Canola	plastid, vacuole	57.92	54.31
Os11t0515500-01	Rice	cytosol	51.96	53.7
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	12.78	53.57
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	58.26	53.52
CDX89163	Canola	cytosol	53.66	50.32
Bra014378.1-P	Field mustard	cytosol	53.66	50.32
Solyc05g009260.1.1	Tomato	extracellular	6.81	49.38
Solyc06g008780.1.1	Tomato	extracellular	40.72	48.19
Os03t0187500-01	Rice	cytosol	20.44	47.62
Solyc06g007840.2.1	Tomato	extracellular, plastid	6.64	47.56
Os02t0759700-01	Rice	cytosol	47.36	43.64
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	8.18	42.11
Solyc06g084490.1.1	Tomato	plastid	11.75	32.86
Os05t0449500-01	Rice	cytosol	30.15	29.65
Os01t0853400-01	Rice	cytosol	29.81	29.41
Os03t0265500-01	Rice	plasma membrane	29.3	29.2

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:4337827	ProteinID:AAV32196.1
ProteinID:BAF16580.2	ProteinID:BAS92300.1	ProteinID:EEE62352.1	InterPro:F-box-like_dom_sf	GO:GO:0000822	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	GO:GO:0010011	GO:GO:0016567	GO:GO:0019005	GO:GO:0019538
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	EnsemblPlantsGene:Os05g0150500
EnsemblPlants:Os05t0150500-00	PFAM:PF13516	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	UniProt:Q0DKP3	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00000A216D	RefSeq:XP_015639834.1	SEG:seg	:

Description

transport inhibitor response 1, Transport Inhibitor Response1, F-box protein 248Similar to Transport inhibitor response 1. (Os05t0150500-00)

Coordinates

chr5:-:2892746..2898971

Molecular Weight (calculated)

64394.0 Da

IEP (calculated)

7.318

GRAVY (calculated)

0.090

Length

587 amino acids

Sequence
(BLAST)

001: MGRGGSRAAC AAAAPPWHSL PDEVWEHAFS FLPAAADRGA AAGACSSWLR AERRSRRRLA VANCYAAAPR DAVERFPSVR AAEVKGKPHF ADFGLVPPAW
101: GAAAAPWIAA AADGWPLLEE LSFKRMVVTD ECLEMIAASF RNFQVLRLVS CDGFSTAGLA AIAAGCRHLR ELDLQENEIE DCSIHWLSLF PESFTSLVTL
201: NFSCLEGEVN ITVLERLVTR CHNLKTLKLN NAIPLDKLAS LLHKAPQLVE LGTGKFSADY HSDLFAKLEA AFGGCKSLRR LSGAWDAVPD YLPAFYCVCE
301: GLTSLNLSYA TVRGPELIKF ISRCRNLQQL WVMDLIEDHG LAVVASSCNK LQELRVFPSD PFGAGFLTER GLVDVSASCP MLESVLYFCR RMTNEALITI
401: AKNRPNFTCF RLCILEPHTP DYITREPLDA GFSAIVESCR GLRRLSISGL LTDLVFKSIG AHADRLEMLS IAFAGNSDLG LHYILSGCKS LKKLEIRDCP
501: FGDKPLLANA AKLETMRSLW MSSCLLTLGA CRQLARKMPR LSVEIMNDPG RSCPLDSLPD ETPVEKLYVY RTIAGPRSDT PACVQIV

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.