Factsheet for VIT_14s0030g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0104g01320.t01	Wine grape	cytosol	76.42	77.08
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	17.04	67.35
GSMUA_Achr5P26930_001	Banana	cytosol	53.01	66.38
GSMUA_Achr3P23850_001	Banana	cytosol	64.37	64.26
Os05t0150500-00	Rice	plastid	61.79	61.16
Zm00001d010863_P001	Maize	plastid	61.96	61.02
VIT_14s0068g01330.t01	Wine grape	cytosol	59.9	60.84
KXG21312	Sorghum	plastid	61.79	60.74
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	60.59	59.76
TraesCS1A01G091300.1	Wheat	cytosol	60.76	59.63
TraesCS1D01G099900.1	Wheat	cytosol	60.59	58.67
VIT_00s0181g00040.t01	Wine grape	nucleus	55.08	54.89
HORVU1Hr1G021550.4	Barley	cytosol	59.55	53.89
VIT_18s0001g07120.t01	Wine grape	cytosol	50.26	49.16
VIT_01s0146g00450.t01	Wine grape	cytosol	48.54	48.62
VIT_05s0020g00220.t01	Wine grape	cytosol	18.76	45.8
VIT_05s0020g04830.t01	Wine grape	cytosol	18.42	44.96
VIT_13s0019g03380.t01	Wine grape	cytosol	32.36	31.44

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100264085	wikigene:100264085	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10
EMBL:AM433343	ProteinID:CAN73714	ProteinID:CAN73714.1	ProteinID:CCB58127	ProteinID:CCB58127.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	UniProt:F6HTW6	EMBL:FN596249	GO:GO:0000822	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR001810	InterPro:IPR032675	EntrezGene:LOC100264085	wikigene:LOC100264085	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	TIGR:TC58468	TIGR:TC62962	UniParc:UPI00015CB4B5	ArrayExpress:VIT_14s0030g01240
EnsemblPlantsGene:VIT_14s0030g01240	EnsemblPlants:VIT_14s0030g01240.t01	unigene:Vvi.15859	RefSeq:XP_002272850	RefSeq:XP_002272850.1	:

Description

No Description!

Coordinates

chr14:+:5731297..5735020

Molecular Weight (calculated)

65336.0 Da

IEP (calculated)

7.679

GRAVY (calculated)

-0.098

Length

581 amino acids

Sequence
(BLAST)

001: MGYSFPEEVL EHVLSFIDSD SDRNSVSLVC KSWHDIERWC RRRLFVGNCY AVSPAIAIRR FPELRSVSLK GKPHFADFNL VPHEWGGYAY PWIAAFAKAY
101: PWLEELRLKR MVVSDEALEL IAKKFKNFRV LVMYSCEGFS TDGLATIAAN CRNLKELDLS ESEVDDVSGN WLSQFPDSYT SLESLNITSL SSEIRFTALE
201: RLVGRCPNLK TLKLSHSVPL DLLPNLLQKA PQLVELGSGL HTKEVHPDLY SKLAGAFSGC KGLKRLCGLR DVVPSYLPTL YPICFGLTSL NLSDAPIQCP
301: ELIKLVSQCQ NLQRLWVLDY IEDTGLIALA ESCKDLRELR VFPSDPFGQE PNVSLTEQGL VSVSAGCPKL HSVLYFCRRM SNVALSTIAR NRPNLTRFRL
401: CIIERFRPDY ITQEPLDVGF GAIVEHCKDL KRLSLSGLLT DRVFEYIGSH GKKLEMLSLA FAGDSDLGLH HVLSGCKSLR KLEIRDCPFG DKALLANAAK
501: LETMRSLWMS ACQVSYRACK LLGQKMPRLN VEVIAEQGHP DSSPDEYPVE KLYIYRTVSG PRSDMPSFVW TMDKNSALRS S

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.