Factsheet for VIT_00s0181g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g00220.t01	Wine grape	cytosol	36.19	88.66
VIT_05s0020g04830.t01	Wine grape	cytosol	34.99	85.71
KRH41935	Soybean	cytosol	79.25	79.79
KRH49941	Soybean	cytosol	79.07	79.76
PGSC0003DMT400057711	Potato	cytosol	77.87	77.08
Solyc02g079190.2.1	Tomato	cytosol	76.67	76.15
VIT_07s0104g01320.t01	Wine grape	cytosol	56.43	57.12
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	14.07	55.78
VIT_14s0068g01330.t01	Wine grape	cytosol	54.2	55.24
VIT_14s0030g01240.t01	Wine grape	cytosol	54.89	55.08
VIT_18s0001g07120.t01	Wine grape	cytosol	50.94	50.0
VIT_01s0146g00450.t01	Wine grape	cytosol	45.63	45.86
VIT_13s0019g03380.t01	Wine grape	cytosol	32.25	31.44

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100263734	wikigene:100263734	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10
ProteinID:CCB48271	ProteinID:CCB48271.1	UniProt:F6H7S9	EMBL:FN595252	GO:GO:0000822	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001611
InterPro:IPR032675	EntrezGene:LOC100263734	wikigene:LOC100263734	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF13516	PANTHER:PTHR43944	PANTHER:PTHR43944:SF1	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0002109587
ArrayExpress:VIT_00s0181g00040	EnsemblPlantsGene:VIT_00s0181g00040	EnsemblPlants:VIT_00s0181g00040.t01	RefSeq:XP_002271412	RefSeq:XP_002271412.2	:

Description

No Description!

Coordinates

chrUn:-:7655005..7659416

Molecular Weight (calculated)

65486.6 Da

IEP (calculated)

5.321

GRAVY (calculated)

-0.129

Length

583 amino acids

Sequence
(BLAST)

001: MDSKRKKDSP ESNELTRSSP FPDEVLERVL GLVKSHKDRS SVSLVCKDWY NAERWSRTHV FIGNCYSVSP EIVARRFPNI RSVTLKGKPR FSDFNLVPLN
101: WGADIHAWLV VFASKYPLLE ELRLKRMTVT DESLEFLATT FTNFKALSLL SCDGFSTDGL AAIATHCKNM TELDIQENGI DDLGGGWLSC FPENFTSLEV
201: LNFANLSSDV SFDALEKLVS RCRSLKFLKV NKNITLEQLQ RLLECAPQLT ELGTGSFHQE LTTRQYAELE SAFNNCKNLN TLSGLWEATP LYLPVLYPAC
301: MNLTFLNLSD AALQSGELAK LLARCPNLQR LWVLDTVEDK GLEAVGLSCP LLEELRVFPA DPYEQDVVHG VTEMGFVAVS YGCPRLHYVL YFCRQMTNAA
401: VATIVKNCPD FTHFRLCVMN PGEPDYLTDE PMDEAFGAVV KNCTKLQRLA VSGLLTDLTF EYIGKYAKNL ETLSVAFAGS SDWGMQCVLS GCSKLRKLEI
501: RDCPFGNEAL LSGLEKYESM RSLWMSACNV TMNACRRLAK QMPRLNVEVM KDEESDDSQA DKVYVYRSVA GPRRDAPPFV LTL

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.